View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_6 (Length: 484)
Name: NF7671_low_6
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Original strand, 14610162 - 14610624
Alignment:
| Q |
17 |
agaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagggagg |
116 |
Q |
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| T |
14610162 |
agaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagggagg |
14610261 |
T |
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| Q |
117 |
aaatgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcc |
216 |
Q |
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| T |
14610262 |
aaatgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcc |
14610361 |
T |
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| Q |
217 |
tggtacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatttgatc |
316 |
Q |
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| T |
14610362 |
tggtacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatttgatc |
14610461 |
T |
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| Q |
317 |
ataaacttacacttacatttcatgtgtatgggggtgtgcgcgcaagtgtatatattatatatcttaatttaactatatgcgtgtatatgagtaggtgatg |
416 |
Q |
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| T |
14610462 |
ataaacttacacttacatttcatgtgtacgggggtgtgcgcgcaagtgtatatattatatatcttaatttaactatatgcgtgtatatgagtaggtgatg |
14610561 |
T |
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| Q |
417 |
ctaaagcctccaagtcctgatccattaacgcgaagtgcaaacaacaacatcattcatttcagt |
479 |
Q |
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| T |
14610562 |
ctaaagcctccaagtcctgatccattaacgcgaagtgcaaacaacaacatcattgatttcagt |
14610624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 14598315 - 14598018
Alignment:
| Q |
16 |
cagaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagggag |
115 |
Q |
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||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| || || |||||||||||||||||||||||||| ||||| ||| |
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| T |
14598315 |
cagaagaagggtgaaaagggagtacgatgagttcaaagtgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagag |
14598216 |
T |
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| Q |
116 |
gaaatgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggc |
215 |
Q |
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| T |
14598215 |
gaaatgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattgaaggccacttggatggctgatggcacccattggc |
14598116 |
T |
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| Q |
216 |
ctggtacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtat--tatatctaagaataaatt |
311 |
Q |
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| T |
14598115 |
ccggcacttggggttcttcttctagcgaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatatatctaagaataaatt |
14598018 |
T |
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