View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_7 (Length: 463)
Name: NF7671_low_7
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 49849736 - 49849285
Alignment:
| Q |
1 |
attagagaaacataattgattacatagaacaaggtactatgttatcagaacgatgtatttatcgacattttgtttatcgtcaagccatattttttcgtca |
100 |
Q |
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| T |
49849736 |
attagagaaacataattgattacatagaacaagatactatgttatcagaacgatgtatttatcgatattttgtttatcgtcaagccatattttttcgtca |
49849637 |
T |
|
| Q |
101 |
acgatactcaaacatgaaacc-ttacgtaaggtattcaagtcgattttcatcaaatattatttaaatcatatatatat----------tttatttattct |
189 |
Q |
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| T |
49849636 |
acgataatcaaacatgaaacccttacgtaaggtattcaagtcgattttcatcaaatattatttaaatcatatatatatatatatatattttgtttattct |
49849537 |
T |
|
| Q |
190 |
tggtcctaacgtatagactgttagtccctactgcctagtacctagtctaccaaacccgtatagtgaaattccatgaggagcatatataaaagcatgaaca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49849536 |
tggtcctaacgtatagactgttagtccctactgcctagtacctagtctaccaaacccgtatagtgaaattccatgaggagcatatataaaagcatgaaca |
49849437 |
T |
|
| Q |
290 |
tgtaccatgttactcacactcctaaaacttatttctaaattgcaactacctagtgtttaaattccacaccttcaatannnnnnngatcttgaacacagct |
389 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49849436 |
tgtaccatgttactcacactcctaaaacatatttctaaattgcaactacctagtgtttaaattccacaccttcaattttttttttatcttgaacacagct |
49849337 |
T |
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| Q |
390 |
tgtacatctttgtatgatgaacaccactagaacattagctatgtccacaact |
441 |
Q |
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| T |
49849336 |
tgtacatctttgtatgatgaacaccactagaacattagctatgtccacaact |
49849285 |
T |
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