View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_8 (Length: 459)
Name: NF7671_low_8
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Original strand, 47561758 - 47562200
Alignment:
| Q |
16 |
tatcaatagggaaattggttgaagcacctatataatcttagtactgcaagataacaaaggaaaataaaatgagaaaattgatactgtaaaatctaattta |
115 |
Q |
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| T |
47561758 |
tatcaatagggaaattggttgaagcacctatataatcttagtactgcaagataacaaaggaaaataaaatgagaaaattgatactgtaaaatctaattta |
47561857 |
T |
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| Q |
116 |
ttaaggagatattttcgttgtgcataaaagatagcaaaatatgattactggctattggatgtaaatattttttatcatcaactatatatgcatgtatttg |
215 |
Q |
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| T |
47561858 |
ttaaggagatattttcgttgtgcataaaagatagcaaaatatgattacttgctattggatgtaaatattttttatcatcaactatatatgcatgtatttg |
47561957 |
T |
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| Q |
216 |
tatagatgttaaacacattgtcttaagatgatattgttgatnnnnnnnnntattatttttactttacatgaaaagaaaccacataaacttaaaagtatag |
315 |
Q |
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| T |
47561958 |
tatagatgttaaacacattgtcttaagatgatattgttgat-aaaaaaaatattatttttactttacatgaaaagaaaccacataaacttaaaagtatag |
47562056 |
T |
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| Q |
316 |
aacaaatataatttatcagataggtcatttaccttacacgtaataaacaattgactcgggcagacaaattgtctaacctcaacccatctgcccctgcatc |
415 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47562057 |
aacatatataatttatcagataggtcatttaccttacacgtaataaacaattgactcgggcagacaaattgtctaacctcaacccatctgcccctgcatc |
47562156 |
T |
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| Q |
416 |
aacaaatgcaaatgtcaaaacaatataatcattgaaaaagacaa |
459 |
Q |
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| T |
47562157 |
aacaaatgcaaatgtcaaaacaatataatcattaaaaaagacaa |
47562200 |
T |
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