View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7672_low_1 (Length: 428)
Name: NF7672_low_1
Description: NF7672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7672_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 1394961 - 1395364
Alignment:
| Q |
20 |
gaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttggcttgactagt |
119 |
Q |
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| T |
1394961 |
gaaacgacatttgatacttagatatttaatatttctgacggaaacatcaataacttacaattcataacggctacaagtcacaatacttggcttgactagt |
1395060 |
T |
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| Q |
120 |
aaatatagttcaagactttgatattttattcatctcaaaacatactaatttaatatacaagattttggattataaatagttcaagacttataattatgca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1395061 |
aaatatagttcaagactttgatattttattcatctcaaaacatactaatttaatatacaagattttggattataaatagttcaagacttataattatgca |
1395160 |
T |
|
| Q |
220 |
taacataaacacaattatgcgctcaatgtcacattttgtttgaaacttcacaaaagattaattataatataaacatcagacgatagttcatagtagatta |
319 |
Q |
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| T |
1395161 |
taacataaacacaattatgcgctcaatgtcacattttgtttgaaacttcacaaaagattaattataatataaacatcagacgatagttcatagtagatta |
1395260 |
T |
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| Q |
320 |
ctcagccacatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcgtggagtttctactaatttatagttcttct |
419 |
Q |
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| T |
1395261 |
ctcagccatatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttagtcgtggagtttctactaatttatagttcttat |
1395360 |
T |
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| Q |
420 |
cact |
423 |
Q |
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|||| |
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| T |
1395361 |
cact |
1395364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 1406188 - 1406332
Alignment:
| Q |
20 |
gaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttggcttgactagt |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1406188 |
gaaacgacatttgatacttagatatttaatattactgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttggcttgactagt |
1406287 |
T |
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| Q |
120 |
aaatatagttcaagactttgatattttattcatctcaaaacatacta |
166 |
Q |
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| T |
1406288 |
aa--atagttcaagactttgatattttattcatctcaaaacatacta |
1406332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 315 - 423
Target Start/End: Original strand, 1406345 - 1406453
Alignment:
| Q |
315 |
gattactcagccacatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcgtggagtttctactaatttatagtt |
414 |
Q |
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| T |
1406345 |
gattactcagccatatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcatggagtttctactaatttatagtt |
1406444 |
T |
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| Q |
415 |
cttctcact |
423 |
Q |
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||| ||||| |
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| T |
1406445 |
cttatcact |
1406453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 42409317 - 42409130
Alignment:
| Q |
28 |
atttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttggcttgactagtaaatatag |
127 |
Q |
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|||| |||||| ||||||||||||| ||| |||| ||||||||||| ||||| ||||||||| ||| ||||||||| |||||||||||||| ||| |
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| T |
42409317 |
atttaatacttggatatttaatattatagactgaaatatcaacaacttccaatttgtaacggctaagagttacaatacttagcttgactagtaaa-gtag |
42409219 |
T |
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| Q |
128 |
ttcaagac---tttgatatttta-----ttcatctcaaaacatactaatttaatatacaagattttggattataaatagttcaagactt |
208 |
Q |
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|||||||| |||| ||||||| ||| |||||||||||| ||| |||||||||| ||| | || ||| |||| |||||||||| |
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| T |
42409218 |
ttcaagactaatttggtattttacattgttcgtctcaaaacataataacctaatatacaacattcttgactatcaataattcaagactt |
42409130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 42408993 - 42408938
Alignment:
| Q |
328 |
catccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctact |
384 |
Q |
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|||||||||| ||| ||||||||||||||||||| |||||| | |||||||| |||| |
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| T |
42408993 |
catccttaccattgaatacatgttcatctaaaaa-ataaattgagatgagatttact |
42408938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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