View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7672_low_2 (Length: 342)

Name: NF7672_low_2
Description: NF7672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7672_low_2
NF7672_low_2
[»] chr4 (11 HSPs)
chr4 (10-327)||(43932459-43932776)
chr4 (33-134)||(19304973-19305076)
chr4 (25-89)||(23819128-23819192)
chr4 (24-79)||(1132967-1133022)
chr4 (27-78)||(2841667-2841718)
chr4 (25-87)||(3176073-3176135)
chr4 (22-64)||(24747355-24747397)
chr4 (22-111)||(2996609-2996700)
chr4 (25-89)||(27123319-27123383)
chr4 (34-77)||(34398663-34398707)
chr4 (22-54)||(39438540-39438572)
[»] chr3 (23 HSPs)
chr3 (14-111)||(37273162-37273261)
chr3 (14-77)||(1217779-1217842)
chr3 (25-133)||(36646303-36646413)
chr3 (16-133)||(45541601-45541720)
chr3 (18-52)||(25186017-25186051)
chr3 (11-56)||(16990161-16990206)
chr3 (25-77)||(27016428-27016480)
chr3 (24-72)||(41724250-41724298)
chr3 (25-77)||(43115095-43115147)
chr3 (22-89)||(27896137-27896204)
chr3 (14-57)||(33883749-33883792)
chr3 (27-78)||(42817200-42817251)
chr3 (11-62)||(52440656-52440707)
chr3 (22-72)||(23808048-23808098)
chr3 (26-92)||(24624250-24624316)
chr3 (25-83)||(42745077-42745135)
chr3 (24-57)||(3015842-3015875)
chr3 (25-62)||(12923319-12923356)
chr3 (25-86)||(14598523-14598584)
chr3 (23-72)||(34382979-34383028)
chr3 (25-78)||(36200135-36200188)
chr3 (22-79)||(36445861-36445918)
chr3 (11-90)||(402507-402587)
[»] chr8 (18 HSPs)
chr8 (22-89)||(11569424-11569491)
chr8 (25-89)||(14949905-14949969)
chr8 (14-62)||(30389127-30389175)
chr8 (22-57)||(3600737-3600772)
chr8 (22-57)||(4281582-4281617)
chr8 (22-85)||(9540967-9541030)
chr8 (19-78)||(11415187-11415246)
chr8 (22-57)||(14339604-14339639)
chr8 (15-77)||(9835879-9835941)
chr8 (25-79)||(25869243-25869297)
chr8 (35-89)||(26410329-26410383)
chr8 (11-57)||(38421289-38421335)
chr8 (24-57)||(779060-779093)
chr8 (22-75)||(41620272-41620325)
chr8 (22-94)||(5069733-5069805)
chr8 (25-89)||(5088891-5088955)
chr8 (25-77)||(13000403-13000455)
chr8 (14-78)||(30259142-30259206)
[»] chr5 (16 HSPs)
chr5 (14-77)||(41957430-41957493)
chr5 (22-89)||(11700345-11700412)
chr5 (11-78)||(13604827-13604894)
chr5 (28-87)||(40534241-40534300)
chr5 (22-87)||(1019435-1019500)
chr5 (25-86)||(35963280-35963341)
chr5 (33-80)||(19369360-19369407)
chr5 (11-57)||(36639547-36639593)
chr5 (24-89)||(13264072-13264137)
chr5 (23-89)||(21768162-21768230)
chr5 (23-72)||(22020356-22020405)
chr5 (7-63)||(1899175-1899231)
chr5 (22-70)||(8177518-8177566)
chr5 (14-77)||(16380550-16380614)
chr5 (10-46)||(32197744-32197780)
chr5 (42-86)||(40499696-40499740)
[»] chr7 (18 HSPs)
chr7 (14-89)||(3468642-3468717)
chr7 (22-89)||(32443240-32443307)
chr7 (16-89)||(24967091-24967164)
chr7 (26-78)||(6857317-6857369)
chr7 (33-89)||(20553150-20553206)
chr7 (33-134)||(28844537-28844640)
chr7 (25-89)||(33894666-33894730)
chr7 (25-89)||(39345510-39345574)
chr7 (18-85)||(4001619-4001686)
chr7 (10-89)||(4966180-4966259)
chr7 (18-77)||(39539760-39539819)
chr7 (22-89)||(46082072-46082139)
chr7 (14-63)||(9038140-9038188)
chr7 (16-57)||(45078308-45078349)
chr7 (33-85)||(32329116-32329168)
chr7 (25-89)||(39334232-39334296)
chr7 (25-77)||(39360062-39360114)
chr7 (25-89)||(48157087-48157151)
[»] chr6 (18 HSPs)
chr6 (25-133)||(281769-281879)
chr6 (22-89)||(31624294-31624361)
chr6 (25-87)||(34939783-34939845)
chr6 (25-78)||(2034424-2034477)
chr6 (12-57)||(9027604-9027649)
chr6 (33-87)||(33385574-33385630)
chr6 (28-133)||(30863288-30863395)
chr6 (25-89)||(31583718-31583782)
chr6 (22-57)||(3528839-3528874)
chr6 (25-92)||(2167120-2167189)
chr6 (25-92)||(2178753-2178822)
chr6 (25-78)||(2027384-2027437)
chr6 (36-89)||(2767716-2767769)
chr6 (24-69)||(4246448-4246493)
chr6 (8-57)||(27909637-27909686)
chr6 (22-127)||(2023313-2023420)
chr6 (25-89)||(2460118-2460182)
chr6 (26-54)||(24828840-24828868)
[»] chr1 (21 HSPs)
chr1 (25-79)||(12477264-12477318)
chr1 (25-78)||(27140517-27140570)
chr1 (18-89)||(4445740-4445811)
chr1 (22-68)||(28689440-28689486)
chr1 (27-89)||(32515408-32515470)
chr1 (11-89)||(44031966-44032044)
chr1 (25-90)||(15579521-15579586)
chr1 (22-133)||(11695897-11696011)
chr1 (22-111)||(31517683-31517774)
chr1 (14-57)||(3224451-3224494)
chr1 (11-62)||(34290261-34290312)
chr1 (33-87)||(29929590-29929644)
chr1 (23-89)||(38170657-38170723)
chr1 (10-79)||(9602638-9602706)
chr1 (22-83)||(11639389-11639450)
chr1 (25-89)||(4868439-4868502)
chr1 (22-62)||(10199402-10199442)
chr1 (7-55)||(20713677-20713725)
chr1 (11-47)||(26779934-26779970)
chr1 (33-77)||(27145968-27146012)
chr1 (25-57)||(30371187-30371219)
[»] chr2 (16 HSPs)
chr2 (19-89)||(5759542-5759612)
chr2 (18-89)||(10567089-10567160)
chr2 (36-78)||(13056187-13056229)
chr2 (14-57)||(1893280-1893323)
chr2 (22-89)||(11063524-11063591)
chr2 (25-133)||(28677580-28677690)
chr2 (22-80)||(35378992-35379050)
chr2 (14-56)||(42621375-42621417)
chr2 (11-72)||(680528-680589)
chr2 (35-76)||(26281861-26281902)
chr2 (33-90)||(32821856-32821913)
chr2 (28-88)||(9478341-9478401)
chr2 (25-77)||(9878661-9878713)
chr2 (25-57)||(30538172-30538204)
chr2 (14-54)||(36415675-36415715)
chr2 (17-57)||(44606109-44606149)
[»] scaffold0024 (1 HSPs)
scaffold0024 (20-89)||(27610-27679)
[»] scaffold0428 (1 HSPs)
scaffold0428 (43-89)||(3963-4009)
[»] scaffold0254 (1 HSPs)
scaffold0254 (25-92)||(3512-3581)
[»] scaffold0311 (1 HSPs)
scaffold0311 (25-57)||(10616-10648)
[»] scaffold0147 (1 HSPs)
scaffold0147 (28-72)||(12688-12732)
[»] scaffold0110 (1 HSPs)
scaffold0110 (37-85)||(33883-33931)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 43932459 - 43932776
Alignment:
Q  10 ctgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttacgtgcttatgccaataaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  43932459 ctgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccgtaaactctcctaaacagtcttacgtgcttctgccaataaa 43932558  T
Q  110 tattctcaaaaaagtcaatccaaattccaaacacgccctaaatcaaagatgaatcaaggagtggtagcaaagcacatggttacctaagcagtaacggatc 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43932559 tattctcaaaaaagtcaatccaaattccaaacaggccctaaatcaaagatgaatcaaggagtggtagcaaagcacatggttacctaagcagtaacggatc 43932658  T
Q  210 aaaaaagcatcttgggatcgaagccatagatatatctatttaattaatatattgtcacttaaaattaaaataaacactacatgcaagggctaaaggctag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43932659 aaaaaagcatcttgggatcgaagccatagatatatctatttaattaatatattgtcacttaaaattaaaataaacactacatgcaagggctaaaggctag 43932758  T
Q  310 atgtaaaaataaataaaa 327  Q
    ||||||||||||||||||    
T  43932759 atgtaaaaataaataaaa 43932776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 19304973 - 19305076
Alignment:
Q  33 tgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaatattctcaaaaaagtcaatcc 130  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| ||||| | ||| ||| ||   |||||||| ||||| ||| ||||||| ||||||||||    
T  19304973 tgaaaacaacttatggacatgtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatgtcaatagataatctcaaataagtcaatcc 19305072  T
Q  131 aaat 134  Q
    ||||    
T  19305073 aaat 19305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 23819128 - 23819192
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||||||||||||||||||||||||||||| ||||| || | |||||||| | |||||||||    
T  23819128 aaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactcttccaaacagtct 23819192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 1132967 - 1133022
Alignment:
Q  24 aaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcc 79  Q
    |||||||| |||||||| ||||| |||||||||||||||| ||| |||| ||||||    
T  1132967 aaaataagctgaaaacaccttattgacatgtcatgagctgtttctataagctctcc 1133022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 2841667 - 2841718
Alignment:
Q  27 ataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    ||||| |||||||||||||| |||||||||| || ||||| |||||||||||    
T  2841667 ataagctgaaaacaacttattgacatgtcataagttgctttcataaactctc 2841718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 3176135 - 3176073
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagt 87  Q
    ||||||| |||||||||||||| |||||| ||| || || || ||||| ||||||||||||||    
T  3176135 aaataagctgaaaacaacttatagacatgacataagatgttttcataagctctcctaaacagt 3176073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 24747355 - 24747397
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgc 64  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  24747355 tgaaaataagctgaaaacaacttatgaacatgtcattagctgc 24747397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 2996609 - 2996700
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct--tacgtgcttatgccaataaata 111  Q
    |||||||||| |||||| | |||||||||||||||| || || || ||||| |||||  |||||||||   | ||||||||| |||||||||    
T  2996609 tgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaata 2996700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 27123383 - 27123319
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| |||||||||||||  |||||||||| || || |||||||| |||||  |||||||||    
T  27123383 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtct 27123319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 34398707 - 34398663
Alignment:
Q  34 gaaaacaacttatggacatgtcat-gagctgcttccataaactct 77  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||    
T  34398707 gaaaacaacttatgggcatgtcataaagctgcttccataaactct 34398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 39438572 - 39438540
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgt 54  Q
    |||||||||| ||||||||||||||||||||||    
T  39438572 tgaaaataagttgaaaacaacttatggacatgt 39438540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 37273162 - 37273261
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaata 111  Q
    ||||||| || ||||||| ||||||||||||||||||||||||| || || |||||||| |||||| ||||||||| ||  |||||||||| ||||||||    
T  37273162 agaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaata 37273261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 1217842 - 1217779
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| ||||| |||| ||| ||||    
T  1217842 agaacttatgaaagtaagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 1217779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 36646413 - 36646303
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaatattctcaaaaaa 122  Q
    |||||||||||||||| |||||||||||| ||| ||  | |||||||| |||||| ||| ||||||||  |||| |||||||||| |||| || ||| ||    
T  36646413 aaataagatgaaaacagcttatggacatgccataagtggtttccataagctctcccaaatagtcttacaagtgcctatgccaatagatatgcttaaataa 36646314  T
Q  123 gtcaatccaaa 133  Q
    ||| |||||||    
T  36646313 gtcgatccaaa 36646303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 45541601 - 45541720
Alignment:
Q  16 aacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaatatt 113  Q
    ||||| ||| |||||  |||||||| |||||| ||||||||| ||||| || |||||  ||| ||||||||||||||  ||| |||| ||| ||||||      
T  45541601 aacttatgagaataacctgaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttataccattaaataag 45541700  T
Q  114 ctcaaaaaagtcaatccaaa 133  Q
    |||||| |||||||||||||    
T  45541701 ctcaaataagtcaatccaaa 45541720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 25186017 - 25186051
Alignment:
Q  18 cttgtgaaaataagatgaaaacaacttatggacat 52  Q
    |||||||||||||||||||||||||||||||||||    
T  25186017 cttgtgaaaataagatgaaaacaacttatggacat 25186051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 16990206 - 16990161
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggacatgtca 56  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||    
T  16990206 tgaagaacttgtgcaaataagctgaaaacaacttatagacatgtca 16990161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 27016480 - 27016428
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    ||||||| ||||||||| |||| || ||||||||||||| |||||||||||||    
T  27016480 aaataagctgaaaacaagttatagatatgtcatgagctgtttccataaactct 27016428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 41724250 - 41724298
Alignment:
Q  24 aaaataagatgaaaacaacttatggacatgtcatgagctgcttccataa 72  Q
    |||||||| ||||||||||||||||||||||||| || || ||||||||    
T  41724250 aaaataagctgaaaacaacttatggacatgtcataagttgtttccataa 41724298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 43115095 - 43115147
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    ||||||| ||||||||| ||||||||||||||| || || |||||||||||||    
T  43115095 aaataagctgaaaacaagttatggacatgtcataagttgtttccataaactct 43115147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 27896204 - 27896137
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||| |||  |||| ||||| || |||||||||||| || |||||| |||||||||||||||    
T  27896204 tgaaaataagctgacgacaatttatgaacttgtcatgagctgttttcataaattctcctaaacagtct 27896137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 33883792 - 33883749
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||    
T  33883792 agaacttatgaaaataagctgaaaacaacttatgaacatgtcat 33883749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 42817251 - 42817200
Alignment:
Q  27 ataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    ||||| |||||||||||||||||||||||||  |||| |||||||| |||||    
T  42817251 ataagctgaaaacaacttatggacatgtcatatgctgtttccataagctctc 42817200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 52440707 - 52440656
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagct 62  Q
    |||||||||| ||||||| || ||||||||||||||| ||||||||| ||||    
T  52440707 tgaagaacttatgaaaattagttgaaaacaacttatgaacatgtcataagct 52440656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 23808098 - 23808048
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataa 72  Q
    |||||||||||||||||||| || || ||||||||| |||||||| |||||    
T  23808098 tgaaaataagatgaaaacaatttgtgaacatgtcataagctgctttcataa 23808048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 24624250 - 24624316
Alignment:
Q  26 aataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac 92  Q
    |||||| ||||||||  ||||||||||||||| ||||| || ||||| |||| | ||||||||||||    
T  24624250 aataagctgaaaacagtttatggacatgtcataagctgttttcataagctcttccaaacagtcttac 24624316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 42745077 - 42745135
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaa 83  Q
    ||||||||||||||||||||||| ||||||||| || || || |||||| ||| |||||    
T  42745077 aaataagatgaaaacaacttatgaacatgtcataagttgtttacataaattcttctaaa 42745135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 3015875 - 3015842
Alignment:
Q  24 aaaataagatgaaaacaacttatggacatgtcat 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  3015875 aaaataagatgaaaacatcttatggacatgtcat 3015842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 12923356 - 12923319
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagct 62  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  12923356 aaataagctgaaaacaacttatggacatgtcataagct 12923319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 14598584 - 14598523
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacag 86  Q
    ||||||| || |||||||||||||||||||||| || |  |||||||||||| || ||||||    
T  14598584 aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 14598523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 34382979 - 34383028
Alignment:
Q  23 gaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataa 72  Q
    |||||||||||||||||||||||| ||||| |||| | ||| ||||||||    
T  34382979 gaaaataagatgaaaacaacttatagacatatcataatctgtttccataa 34383028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 36200135 - 36200188
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    ||||||| ||||||||||||||||||||||||| || || || || ||||||||    
T  36200135 aaataagctgaaaacaacttatggacatgtcataagttgtttacaaaaactctc 36200188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 36445861 - 36445918
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcc 79  Q
    |||||||||||||||||||||| ||| ||||||||| ||| | |||| ||| ||||||    
T  36445861 tgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcc 36445918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 402587 - 402507
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggac-atgtcatgagctgcttccataaactctcctaaacagtctt 90  Q
    |||||||||||||||| |||| |||||||| |||||| || ||||||| ||||| || ||||   ||||| ||||||||||    
T  402587 tgaagaacttgtgaaattaagctgaaaacagcttatgaacaatgtcataagctgttttcatacgttctcccaaacagtctt 402507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 11569491 - 11569424
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||| ||||||||||||||| ||||||||| ||||| |||||||| ||||| ||||||||||    
T  11569491 tgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtct 11569424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 14949905 - 14949969
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| |||||||| |||||||||||||||| || |  || ||||| ||||||||||||||||    
T  14949905 aaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtct 14949969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 30389127 - 30389175
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagct 62  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||| ||||    
T  30389127 agaacttatgaaaataagctgaaaacaacttatgaacatgtcattagct 30389175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 3600772 - 3600737
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||||||| |||||||||||||||||||||||||    
T  3600772 tgaaaataagttgaaaacaacttatggacatgtcat 3600737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 4281582 - 4281617
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||||||||||||||||||||||| |||||||||    
T  4281582 tgaaaataagatgaaaacaacttatgaacatgtcat 4281617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 9541030 - 9540967
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaaca 85  Q
    |||||||||| |||| |||| ||||||||||||||| || || |||||||| |||||| |||||    
T  9541030 tgaaaataagctgaacacaaattatggacatgtcataagatgtttccataagctctcccaaaca 9540967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 11415187 - 11415246
Alignment:
Q  19 ttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    ||||||||||||| ||| || | ||||||||||||| || ||||| ||||||||||||||    
T  11415187 ttgtgaaaataagctgagaatagcttatggacatgttataagctgtttccataaactctc 11415246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 14339639 - 14339604
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||||||| |||||||||||||||||||||||||    
T  14339639 tgaaaataagttgaaaacaacttatggacatgtcat 14339604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 9835941 - 9835879
Alignment:
Q  15 gaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    |||||| || |||||||||||||||| |||||| ||||||||| ||||| || ||||| ||||    
T  9835941 gaacttatggaaataagatgaaaacagcttatgaacatgtcataagctgtttacataagctct 9835879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 25869297 - 25869243
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcc 79  Q
    ||||||| ||||||||||||||||||||||||| || |  ||||||| |||||||    
T  25869297 aaataagctgaaaacaacttatggacatgtcataagttatttccatagactctcc 25869243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 26410329 - 26410383
Alignment:
Q  35 aaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||| ||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  26410329 aaaacagcttctggacatgtcatgagctgtttccataagctctcccaagcagtct 26410383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 38421289 - 38421335
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||| |||||| || |||| |||||||||||||||||||||||||    
T  38421289 tgaagatcttgtgtaagtaagctgaaaacaacttatggacatgtcat 38421335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 779093 - 779060
Alignment:
Q  24 aaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||||||||||||||||||||| |||||||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcat 779060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 41620325 - 41620272
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaact 75  Q
    ||||||||||  |||||||||||||||||||||||| |  || |||||||||||    
T  41620325 tgaaaataagcggaaaacaacttatggacatgtcataatttgtttccataaact 41620272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 5069733 - 5069805
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttacgt 94  Q
    |||||||||| ||||||  ||||||| |||||| || || || |||||||| |||||  ||||||||||||||    
T  5069733 tgaaaataagctgaaaatgacttatgaacatgttataagatgtttccataagctctctcaaacagtcttacgt 5069805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 5088891 - 5088955
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| |||||||| ||||||||||||| || | ||| |||||||| |||||| | |||||||    
T  5088891 aaataagttgaaaacagcttatggacatgttataaactgtttccataagctctccaagacagtct 5088955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 13000455 - 13000403
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    ||||||| |||||||||||| |||||||||||| || || | |||||||||||    
T  13000455 aaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactct 13000403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 30259142 - 30259206
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    ||||||| || ||||||  |||||||||||||| ||||| |||| ||||| |||||||| |||||    
T  30259142 agaacttatggaaataaactgaaaacaacttatagacatatcataagctgtttccataagctctc 30259206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 41957493 - 41957430
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||    
T  41957493 agaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 41957430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 11700412 - 11700345
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||  |||||||| |||||||||||||||| || || |||||||||||||||| || |||||    
T  11700412 tgaaaataatctgaaaacagcttatggacatgtcataagttgtttccataaactctcctcaatagtct 11700345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 13604894 - 13604827
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    |||||| ||| |||||||||| |||||||||| |||||||||||||| ||||| || ||||| |||||    
T  13604894 tgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctc 13604827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 40534241 - 40534300
Alignment:
Q  28 taagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagt 87  Q
    |||||||||||| | ||||| ||||||||| |||| ||||||||| ||||||||||||||    
T  40534241 taagatgaaaactaattatgaacatgtcataagctacttccataagctctcctaaacagt 40534300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 1019500 - 1019435
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagt 87  Q
    ||||||||||||||||||||||||||| |||| ||| ||||  ||  |||| ||||||||||||||    
T  1019500 tgaaaataagatgaaaacaacttatggccatggcataagctatttttataagctctcctaaacagt 1019435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 35963280 - 35963341
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacag 86  Q
    ||||||| |||||||||||||||||||||||||  |||  ||||||||  ||||||||||||    
T  35963280 aaataagctgaaaacaacttatggacatgtcatacgctatttccataagttctcctaaacag 35963341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 19369360 - 19369407
Alignment:
Q  33 tgaaaacaacttatggacatgtcatgagctgcttccataaactctcct 80  Q
    |||||||| ||||  ||||||||||||||||||||||||| |||||||    
T  19369360 tgaaaacagcttacagacatgtcatgagctgcttccataagctctcct 19369407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 36639547 - 36639593
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||| ||| ||||||||||| |||||||||||||||||| |||||    
T  36639547 tgaagagcttatgaaaataagaggaaaacaacttatggacacgtcat 36639593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 13264137 - 13264072
Alignment:
Q  24 aaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||| |||||||| |||||| | ||| ||| ||||| ||||||||||||| | |||||||||    
T  13264137 aaaataagctgaaaacagcttatgaatatggcataagctgtttccataaactcttccaaacagtct 13264072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 21768230 - 21768162
Alignment:
Q  23 gaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataa--actctcctaaacagtct 89  Q
    ||||||||| |||||||| | |||||||||||||| ||||| || |||||  ||||||||| |||||||    
T  21768230 gaaaataagttgaaaacagcgtatggacatgtcataagctgttttcataagcactctcctagacagtct 21768162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 22020356 - 22020405
Alignment:
Q  23 gaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataa 72  Q
    ||||||||| |||||||||||||| |||||||||| ||||| ||| ||||    
T  22020356 gaaaataagttgaaaacaacttattgacatgtcataagctgtttcaataa 22020405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 1899175 - 1899231
Alignment:
Q  7 atactgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctg 63  Q
    |||||| |||| || || ||||||| ||||||||||||||| ||||||||| |||||    
T  1899175 atactggagaatttatggaaataagctgaaaacaacttatgcacatgtcataagctg 1899231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 8177566 - 8177518
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccat 70  Q
    |||||||||  |||||||||||||||||||| |||| ||||| ||||||    
T  8177566 tgaaaataacctgaaaacaacttatggacatatcataagctgtttccat 8177518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 16380614 - 16380550
Alignment:
Q  14 agaacttgtgaaaataagatg-aaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    ||||||| || ||||||| || |||||| |||||||||||||| | ||||| |||||||||||||    
T  16380614 agaacttatggaaataagctgcaaaacagcttatggacatgtcgtaagctgtttccataaactct 16380550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 32197744 - 32197780
Alignment:
Q  10 ctgaagaacttgtgaaaataagatgaaaacaacttat 46  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  32197744 ctgaagaacttatgaaaataagatgaaaacagcttat 32197780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 40499740 - 40499696
Alignment:
Q  42 cttatggacatgtcatgagctgcttccataaactctcctaaacag 86  Q
    |||||||||||||||| || || |||||||| |||||||||||||    
T  40499740 cttatggacatgtcataagttgtttccataagctctcctaaacag 40499696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 3468642 - 3468717
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||| ||||||| || |||||||||||||||||||||| || || |||||  |||||||| |||||||||    
T  3468642 agaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtct 3468717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 32443240 - 32443307
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||| |||||||| ||||||||||| | ||||||| ||||||||| ||||  ||||||||||    
T  32443240 tgaaaataagttgaaaacagcttatggacatctaatgagctccttccataagctctaataaacagtct 32443307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 24967091 - 24967164
Alignment:
Q  16 aacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||||||||| |||||||||||| |||| |||| || || || |||||||| |||| | |||||||||    
T  24967091 aacttgtgaaaataagctgaaaacaacttctggatatgttataagttgtttccataatctcttccaaacagtct 24967164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 6857369 - 6857317
Alignment:
Q  26 aataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    |||||| ||||||||||||||||||||| ||| ||||| |||||||| |||||    
T  6857369 aataagttgaaaacaacttatggacatggcataagctgtttccataagctctc 6857317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 20553150 - 20553206
Alignment:
Q  33 tgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||||||||||| ||||||| | ||||| |||||||| ||||||| ||||||||    
T  20553150 tgaaaacaacttatgaacatgtcgtaagctgtttccataagctctcctgaacagtct 20553206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 28844537 - 28844640
Alignment:
Q  33 tgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaatattctcaaaaaagtcaatcc 130  Q
    ||||||||||| ||||||||||||| || || || || || |||||||||||||| | ||  ||||||||| ||||||| |  |||||| |||||||| |    
T  28844537 tgaaaacaactgatggacatgtcataagttgttttcagaagctctcctaaacagtatcacatgtgcttatgacaataaacaagctcaaacaagtcaattc 28844636  T
Q  131 aaat 134  Q
    ||||    
T  28844637 aaat 28844640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 33894666 - 33894730
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| |||||||||||||||||||||||||  |||| || ||||| |||||  |||||||||    
T  33894666 aaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtct 33894730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 39345510 - 39345574
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| ||||| ||||||||||||||||||| | ||| |||||| |||||| | |||||||||    
T  39345510 aaataagctgaaagcaacttatggacatgtcataaactgtttccatgaactctaccaaacagtct 39345574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 4001619 - 4001686
Alignment:
Q  18 cttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaaca 85  Q
    |||||||||||||| |||||| ||||||| | |||||||| || || ||||||||| ||||| |||||    
T  4001619 cttgtgaaaataagctgaaaaaaacttattggcatgtcataagttgtttccataaaatctcccaaaca 4001686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 4966180 - 4966259
Alignment:
Q  10 ctgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| ||| || ||||||  |||||||||||||||||||| |||| ||  | ||| |||| ||||||||||||||||    
T  4966180 ctgaagagcttatggaaataaactgaaaacaacttatggacatatcataagtggtttctataagctctcctaaacagtct 4966259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 39539819 - 39539760
Alignment:
Q  18 cttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    ||||| |||||||| |||||||| |||||||||||||||| || || |||| ||||||||    
T  39539819 cttgtcaaaataagctgaaaacagcttatggacatgtcataagttgtttccgtaaactct 39539760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 46082072 - 46082139
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||| |||||||||||||||| |||||||| || || || ||||| ||||| | ||||||||    
T  46082072 tgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcattaacagtct 46082139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 9038140 - 9038188
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctg 63  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||| |||||    
T  9038140 agaacttgtgaaaataagctgaaaacaa-ttatgaacatgtcataagctg 9038188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 45078308 - 45078349
Alignment:
Q  16 aacttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||||| ||||||| |||||||| ||||||||||||||||    
T  45078308 aacttgtggaaataagttgaaaacagcttatggacatgtcat 45078349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 32329116 - 32329168
Alignment:
Q  33 tgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaaca 85  Q
    ||||||||||||| ||||||||||| |||||||| | ||| |||||| |||||    
T  32329116 tgaaaacaacttagggacatgtcataagctgctttcttaagctctcccaaaca 32329168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 39334232 - 39334296
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| ||||  ||||||||||||||||||| |  || ||||||||||||| | |||||||||    
T  39334232 aaataagctgaatgcaacttatggacatgtcataaattgtttccataaactctaccaaacagtct 39334296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 39360062 - 39360114
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    ||||||| ||||| ||||||||||| ||||||| || || |||||||||||||    
T  39360062 aaataagctgaaagcaacttatggatatgtcataagttgtttccataaactct 39360114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 48157151 - 48157087
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| |||||||| |||||||||||| ||| || || ||| |||| |||||| |||||||||    
T  48157151 aaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtct 48157087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 281879 - 281769
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaatattctcaaaaaa 122  Q
    ||||||| |||||||||||||| |||||||||| || ||||||||| | |||||| ||||||||| ||  || |||||| || || ||| ||||||  ||    
T  281879 aaataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacagtctcacaagtacttatgtcactacataatctcaagtaa 281780  T
Q  123 gtcaatccaaa 133  Q
    |||||||||||    
T  281779 gtcaatccaaa 281769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 31624294 - 31624361
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||||| || |||| |||||||||||||||||||||||| || |||||| ||| | |||||||||    
T  31624294 tgaaaataacattaaaataacttatggacatgtcatgagctgttttcataaattctaccaaacagtct 31624361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 34939783 - 34939845
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagt 87  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||| ||| |||||| |||||||    
T  34939783 aaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagt 34939845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 2034477 - 2034424
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    ||||||| |||||||| |||||||| ||||||| ||||| ||||||||||||||    
T  2034477 aaataagctgaaaacagcttatggaaatgtcataagctgtttccataaactctc 2034424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 9027604 - 9027649
Alignment:
Q  12 gaagaacttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||    
T  9027604 gaagagcttatgaaaataagctgaaaacaacttatggacatgtcat 9027649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 33385574 - 33385630
Alignment:
Q  33 tgaaaacaactt--atggacatgtcatgagctgcttccataaactctcctaaacagt 87  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||| | |||||||    
T  33385574 tgaaaacaacttttatggacatgtcatgagctgtttccataaactcttccaaacagt 33385630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 30863288 - 30863395
Alignment:
Q  28 taagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaatattctcaaaaaagtc 125  Q
    |||| ||||||||||||||| ||||||||| || || || ||||| |||| | ||| ||||| ||  ||| |||||||||||||||  |||||| |||||    
T  30863288 taagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatgccaataaataggctcaaataagtc 30863387  T
Q  126 aatccaaa 133  Q
    | ||||||    
T  30863388 actccaaa 30863395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 31583718 - 31583782
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| ||||||||||||||||||||||||| ||| | ||  |||| |||||| |||||||||    
T  31583718 aaataagttgaaaacaacttatggacatgtcattagcggtttaaataagctctccaaaacagtct 31583782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 3528839 - 3528874
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||||||||||||||||| |||||||||||||||    
T  3528839 tgaaaataagatgaaaacaagttatggacatgtcat 3528874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 2167189 - 2167120
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttc--cataaactctcctaaacagtcttac 92  Q
    ||||||| |||||||||||||||||||| |||| || ||||||  ||||| |||||  ||||||||||||    
T  2167189 aaataagctgaaaacaacttatggacatatcataaggtgcttccacataagctctctcaaacagtcttac 2167120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 2178822 - 2178753
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttc--cataaactctcctaaacagtcttac 92  Q
    ||||||| |||||||||||||||||||| |||| || ||||||  ||||| |||||  ||||||||||||    
T  2178822 aaataagctgaaaacaacttatggacatatcataaggtgcttccacataagctctctcaaacagtcttac 2178753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 2027437 - 2027384
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    ||||||| |||||||| |||||||| ||||||| ||||| || |||||||||||    
T  2027437 aaataagctgaaaacagcttatggaaatgtcataagctgttttcataaactctc 2027384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 2767769 - 2767716
Alignment:
Q  36 aaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||| |||||||||||||||| ||||| ||||| || ||||||||| ||||||    
T  2767769 aaacagcttatggacatgtcataagctgtttccacaagctctcctaagcagtct 2767716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 4246448 - 4246493
Alignment:
Q  24 aaaataagatgaaaacaacttatggacatgtcatgagctgcttcca 69  Q
    |||||||| |||||||| ||||||||||||||||||| || |||||    
T  4246448 aaaataagttgaaaacagcttatggacatgtcatgagttgtttcca 4246493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 27909686 - 27909637
Alignment:
Q  8 tactgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    ||||| ||| ||| || ||||||| |||||||||||||||||||||||||    
T  27909686 tactggagagcttatggaaataagctgaaaacaacttatggacatgtcat 27909637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 2023420 - 2023313
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaatattctcaaa 119  Q
    |||||||||| |||||||||||||| |||| || || ||||| ||| || | |||| | ||||||||| ||  ||||||| || ||||||||  ||||||    
T  2023420 tgaaaataagttgaaaacaacttatagacaagttataagctggttctatgagctcttccaaacagtctcactagtgcttacgctaataaataagctcaaa 2023321  T
Q  120 aaagtcaa 127  Q
     |||||||    
T  2023320 caagtcaa 2023313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 2460182 - 2460118
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| |||||||||||||  |||||||||| || || |||||||| |||||  |||||||||    
T  2460182 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtct 2460118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 24828868 - 24828840
Alignment:
Q  26 aataagatgaaaacaacttatggacatgt 54  Q
    |||||||||||||||||||||||||||||    
T  24828868 aataagatgaaaacaacttatggacatgt 24828840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 12477318 - 12477264
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcc 79  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  12477318 aaataagctgaaaacaacttatggacatgtcataagctgctttcattaactctcc 12477264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 27140517 - 27140570
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    ||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||    
T  27140517 aaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctc 27140570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4445740 - 4445811
Alignment:
Q  18 cttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||||||| |||||||| ||| || |||||| || |||||||| |||||| ||||| |||||||||    
T  4445740 cttgtgaaaataagttgaaaacagcttctgaacatgttataagctgctttcataaattctcccaaacagtct 4445811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 28689486 - 28689440
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttcc 68  Q
    |||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  28689486 tgaaaataagctgaaaacaacttatggacatgtcataagctgtttcc 28689440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 32515470 - 32515408
Alignment:
Q  27 ataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||| |||||||||||||| ||||||||||  |||| |||||||| |||||| |||||||||    
T  32515470 ataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtct 32515408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 44032044 - 44031966
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||| ||| || |||| || |||||| | |||||||||||||||| |||||||| ||||| |||||||| |||||||    
T  44032044 tgaagagcttatggaaattagctgaaaatagcttatggacatgtcattagctgcttacataagctctcctagacagtct 44031966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 15579521 - 15579586
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtctt 90  Q
    ||||||| ||| ||||||||||||||||||||| || || ||||| || |||||| ||||||||||    
T  15579521 aaataagctgagaacaacttatggacatgtcataagttgtttccacaagctctcccaaacagtctt 15579586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 11695897 - 11696011
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttacgtg---cttatgccaataaatattctcaa 118  Q
    |||||||||| |||||||| |||||||||||||||| | ||| |||||||  || ||| ||||| ||| ||  |   ||||||| ||||||||  |||||    
T  11695897 tgaaaataagttgaaaacagcttatggacatgtcataaactgtttccatatgctttcccaaacaatctcacaggagtcttatgctaataaataagctcaa 11695996  T
Q  119 aaaagtcaatccaaa 133  Q
    | |||||||||||||    
T  11695997 ataagtcaatccaaa 11696011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 31517774 - 31517683
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtcttac--gtgcttatgccaataaata 111  Q
    |||||||||| |||||||| |||||| |||||||||||| || ||  ||||  ||||| ||||||||| ||  |||||||||||| ||||||    
T  31517774 tgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaata 31517683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 3224451 - 3224494
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||    
T  3224451 agaacttatgaaaataagctgagaacaacttatggacatgtcat 3224494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 34290261 - 34290312
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagct 62  Q
    |||||||||| |||||||||| ||||||||||||||| | ||||||| ||||    
T  34290261 tgaagaacttatgaaaataagctgaaaacaacttatgaatatgtcataagct 34290312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 29929644 - 29929590
Alignment:
Q  33 tgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagt 87  Q
    ||||||||||||||| |||||||||||| || || ||||| |||||| |||||||    
T  29929644 tgaaaacaacttatgcacatgtcatgagttgttttcataagctctccaaaacagt 29929590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 38170723 - 38170657
Alignment:
Q  23 gaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||| ||| ||||||||||||||| ||||||||| ||||| || ||||| |||||| || ||||||    
T  38170723 gaaaacaagctgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtct 38170657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 9602706 - 9602638
Alignment:
Q  10 ctgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcc 79  Q
    ||||||||||| |||||||||| ||||||||  ||||  ||||||||| ||||  |||||||||||||||    
T  9602706 ctgaagaacttatgaaaataagttgaaaacagattat-cacatgtcataagctatttccataaactctcc 9602638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 11639450 - 11639389
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaa 83  Q
    |||||||||| | |||||| |||||||||||||||| ||||| || ||||| |||| |||||    
T  11639450 tgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctcttctaaa 11639389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 4868439 - 4868502
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||| |||||||||||||| |||||||||| || || || |||||||||||  |||||||||    
T  4868439 aaataagttgaaaacaacttattgacatgtcataagttg-tttcataaactctctcaaacagtct 4868502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 10199442 - 10199402
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagct 62  Q
    |||||||||| ||||||||||||||| ||||||||| ||||    
T  10199442 tgaaaataagctgaaaacaacttatgaacatgtcataagct 10199402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 20713677 - 20713725
Alignment:
Q  7 atactgaagaacttgtgaaaataagatgaaaacaacttatggacatgtc 55  Q
    ||||| |||| ||| |||||||||||| |||||| ||||||||||||||    
T  20713677 atactaaagagcttatgaaaataagataaaaacagcttatggacatgtc 20713725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 26779970 - 26779934
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatg 47  Q
    |||||||||| |||||||||| |||||||||||||||    
T  26779970 tgaagaacttatgaaaataagttgaaaacaacttatg 26779934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 27145968 - 27146012
Alignment:
Q  33 tgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    |||||| |||||||||||||||||| ||||| |||||||| ||||    
T  27145968 tgaaaataacttatggacatgtcataagctgtttccataagctct 27146012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 30371187 - 30371219
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcat 57  Q
    ||||||| |||||||||||||||||||||||||    
T  30371187 aaataagctgaaaacaacttatggacatgtcat 30371219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5759612 - 5759542
Alignment:
Q  19 ttgtgaaaataagatgaaa-acaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||||||||| ||||| |||||||||||||||||| | ||||| |||||||| |||||| |||||||||    
T  5759612 ttgtgaaaataagctgaaacacaacttatggacatgtc-taagctgtttccataagctctcccaaacagtct 5759542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 10567089 - 10567160
Alignment:
Q  18 cttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||||||| || |||||||||||||||  |||||||| ||||| ||||| || |||||| |||||||||    
T  10567089 cttgtgaaaattagctgaaaacaacttatgatcatgtcataagctgtttccacaatctctcccaaacagtct 10567160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 13056187 - 13056229
Alignment:
Q  36 aaacaacttatggacatgtcatgagctgcttccataaactctc 78  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  13056187 aaacaacttatggacatgccataagctgcttccataaactctc 13056229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 1893323 - 1893280
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||||||||||||||||| |||||| |||||||| |||||||||    
T  1893323 agaacttgtgaaaataagctgaaaataacttatgtacatgtcat 1893280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 11063524 - 11063591
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||||||||| | ||||||||||||||||||||||| |  || |||||||| |||| | |||||||||    
T  11063524 tgaaaataagctaaaaacaacttatggacatgtcataatatgtttccataagctcttccaaacagtct 11063591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 28677690 - 28677580
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtctta--cgtgcttatgccaataaatattctcaaaaaa 122  Q
    |||||||  |||||||||||||| | ||||||| ||||| || |||||  ||||| |||||||||||   || ||||||| | ||||||  |||||||||    
T  28677690 aaataagccgaaaacaacttatgaaaatgtcataagctgttttcataagttctcccaaacagtcttagcagtacttatgcaagtaaataagctcaaaaaa 28677591  T
Q  123 gtcaatccaaa 133  Q
     ||||||||||    
T  28677590 atcaatccaaa 28677580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 35379050 - 35378992
Alignment:
Q  22 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcct 80  Q
    |||||||||| ||||||||||||||| ||| ||||| ||||| || ||||| |||||||    
T  35379050 tgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctctcct 35378992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 42621417 - 42621375
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgtca 56  Q
    |||||||||||||||||| |||||||||||||  |||||||||    
T  42621417 agaacttgtgaaaataagctgaaaacaacttacagacatgtca 42621375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 680528 - 680589
Alignment:
Q  11 tgaagaacttgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataa 72  Q
    ||||||||||||||||||||| ||||||||  ||||  ||||||||| ||||| || |||||    
T  680528 tgaagaacttgtgaaaataagctgaaaacagtttataaacatgtcataagctgttttcataa 680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 26281902 - 26281861
Alignment:
Q  35 aaaacaacttatggacatgtcatgagctgcttccataaactc 76  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||    
T  26281902 aaaacaactaatggacatgtcataagctgtttccataaactc 26281861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 32821856 - 32821913
Alignment:
Q  33 tgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtctt 90  Q
    |||||||| |||||||||||||||| || || ||| ||||||||| | ||||||||||    
T  32821856 tgaaaacagcttatggacatgtcataagttgtttctataaactcttccaaacagtctt 32821913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 9478341 - 9478401
Alignment:
Q  28 taagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtc 88  Q
    ||||||||||||| ||||||||||||| || || || || |||||||||||  ||||||||    
T  9478341 taagatgaaaacagcttatggacatgtaataagttgtttgcataaactctctcaaacagtc 9478401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 9878713 - 9878661
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactct 77  Q
    |||||||  |||||||||||||||||||||||| || || |||||||| ||||    
T  9878713 aaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctct 9878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 30538204 - 30538172
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcat 57  Q
    ||||||| |||||||||||||||||||||||||    
T  30538204 aaataagctgaaaacaacttatggacatgtcat 30538172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 36415715 - 36415675
Alignment:
Q  14 agaacttgtgaaaataagatgaaaacaacttatggacatgt 54  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  36415715 agaacttacgaaaataagatgaaaacaacttatgcacatgt 36415675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 44606149 - 44606109
Alignment:
Q  17 acttgtgaaaataagatgaaaacaacttatggacatgtcat 57  Q
    |||| ||||||| || |||||||||||||||||||||||||    
T  44606149 acttatgaaaatcagctgaaaacaacttatggacatgtcat 44606109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 27610 - 27679
Alignment:
Q  20 tgtgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    |||| ||||||| |||||||||||||| | |||||||| ||||  |||||||| |||||| |||||||||    
T  27610 tgtggaaataagctgaaaacaacttatagccatgtcataagctatttccataagctctcccaaacagtct 27679  T

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Target: scaffold0428 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 3963 - 4009
Alignment:
Q  43 ttatggacatgtcatgagctgcttccataaactctcctaaacagtct 89  Q
    ||||||||||||||||||| | ||||||||||||| | |||||||||    
T  3963 ttatggacatgtcatgagccgtttccataaactcttccaaacagtct 4009  T

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Target: scaffold0254 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 3512 - 3581
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcatgagctgcttc--cataaactctcctaaacagtcttac 92  Q
    ||||||| |||||||||||||||||||| |||| || ||||||  ||||| |||||  ||||||||||||    
T  3512 aaataagctgaaaacaacttatggacatatcataaggtgcttccacataagctctctcaaacagtcttac 3581  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 10648 - 10616
Alignment:
Q  25 aaataagatgaaaacaacttatggacatgtcat 57  Q
    ||||||| |||||||||||||||||||||||||    
T  10648 aaataagctgaaaacaacttatggacatgtcat 10616  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 12732 - 12688
Alignment:
Q  28 taagatgaaaacaacttatggacatgtcatgagctgcttccataa 72  Q
    |||| ||||||||||||||||||||||||| || || ||||||||    
T  12732 taagctgaaaacaacttatggacatgtcataagttgtttccataa 12688  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 33931 - 33883
Alignment:
Q  37 aacaacttatggacatgtcatgagctgcttccataaactctcctaaaca 85  Q
    |||||||||||||||| |||| ||||  ||||| |||||||||||||||    
T  33931 aacaacttatggacatatcataagctctttccacaaactctcctaaaca 33883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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