View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7672_low_3 (Length: 268)
Name: NF7672_low_3
Description: NF7672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7672_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 28153674 - 28153419
Alignment:
| Q |
1 |
tgacagataatccatacatataatttcaattctacttgttcccttgaagcacacacnnnnnnnnn---cacaaatcagaagaaatctatcactaagtaat |
97 |
Q |
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| T |
28153674 |
tgacaggtaatccatacatataatttcaattctgcttgttcccttgaagcacacacaaaaaaaaaaaacacaaatcagaagaaatctatcactaagtaat |
28153575 |
T |
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| Q |
98 |
caaaagagataaatcaaggataaagaaacagttttctatgcatcggggaagtattgtgaaatcattcagtcaattcagatgacgtaagacgactattagg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28153574 |
caaaagagataaatcaaggataaagaaacagttttctatgaatcggggaagtattgtgaaatcattcagtcaattcagatgacgtaggacgactattagg |
28153475 |
T |
|
| Q |
198 |
taacttggacatggcgagtttcttaggacaataattagttcgtatgtactgtgatg |
253 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153474 |
taacttggatatggtgagtttcttaggacaataattagttcgtatgtactgtgatg |
28153419 |
T |
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