View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7673_high_1 (Length: 622)
Name: NF7673_high_1
Description: NF7673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7673_high_1 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 622
Target Start/End: Complemental strand, 21288761 - 21288160
Alignment:
| Q |
16 |
atcacttcaaatcgatatgaataatgttgtacatccatg-aagnnnnnnnntgaatcatgcaccaagttggtctggtcgtatcacgcactaacgtacaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21288761 |
atcacttcaaatcgatatgaataatgttgtacatccatggaaaaaaaaaaatgaatcatgcaccaagttggtc-----gtatcacgcactaacgtacaaa |
21288667 |
T |
|
| Q |
115 |
attgcaatttggctctttgatatctttctttaaagaatatttgatcgtattcgaaggccttcgaatgcctgtcagttgtataagacacatgttatattgt |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |
|
|
| T |
21288666 |
attgcaatttgactctttgatatctttctttaaagaatatttgatcgtattcgaa----------tgtccgtcagttgtataagacacgtgttatattgt |
21288577 |
T |
|
| Q |
215 |
tgtactcat-------gcacaaaagatatatcaaatagttgtcttttgagatagaaatctcatgatttttatcaaaatcaagtccaattcttttgtgatc |
307 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
21288576 |
tgtactcatcttcaatgcacaaaagagatatcgaatagttgtcttttgagatagaaatctcatgatttttatcaaaatcaagttcaattcttttgtgacc |
21288477 |
T |
|
| Q |
308 |
atacatttttgtcattttatgagatatat--tagcatatataaacaatcatttccacttagttttcatatgtgttgaagtattgaacaatatttgttgat |
405 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |
|
|
| T |
21288476 |
atacatttttgtcattttatgatatatatattagcatatataaacaatcatttccacttagttttcatatgtgttgaagtgttgaacaatatatgtggat |
21288377 |
T |
|
| Q |
406 |
aataattgttactccaattatttaatcatcccctttttcaatttgactccaacatgtttttcaaatagagtcttgcatatgaccactctatcttcattag |
505 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21288376 |
aataattgttaccccaattatttaatcatcccctttttcaatttgactccaacatgttttccaaataaagtcttgcatatgaccactctatcttcattag |
21288277 |
T |
|
| Q |
506 |
acatattttcatttctaagaaaatttgttggtgcttgcaacaattacaaatttaatatgccattgtcaacattttttctgcacatggaagtcacaataat |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21288276 |
acatattttcatttctaagaaaatttgttggtgcttccaacaattacaaatttaatatgccattgtcaacattttttctgcacatgaaagtcacaataat |
21288177 |
T |
|
| Q |
606 |
ataaaagacctacttat |
622 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
21288176 |
ataaaagacctagttat |
21288160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 21284670 - 21284586
Alignment:
| Q |
261 |
gaaatctcatgatttttatcaaaatcaagtccaattcttttgtgatcatacatttttgtcattttatgagatatattagcatata |
345 |
Q |
| |
|
||||| ||| |||||| ||| ||| ||||| |||||||||||||| |||| ||||||| |||||||||||| |||||| |||||| |
|
|
| T |
21284670 |
gaaatttcacgattttgatctaaaccaagttcaattcttttgtgaacataaatttttgacattttatgagacatattaacatata |
21284586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Complemental strand, 21284494 - 21284461
Alignment:
| Q |
447 |
tttgactccaacatgtttttcaaatagagtcttg |
480 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
21284494 |
tttgactccaacatgtttttccaatagagtcttg |
21284461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University