View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7673_low_10 (Length: 240)
Name: NF7673_low_10
Description: NF7673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7673_low_10 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 439305 - 439083
Alignment:
| Q |
18 |
attatttgttccattttcaattaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcatttccatctttgtggtgcatcctgtc |
117 |
Q |
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| T |
439305 |
attatttgttccattttcagttaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcatttccatctttgtggtgcatcctatc |
439206 |
T |
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| Q |
118 |
attgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgctaaccaactagtgtttgtctttatgggccttatggttttctcgttcatagccg |
217 |
Q |
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| T |
439205 |
attgtaaaggtcattgatcgcaagacagaaagagatgaatgggatgctaaccaactagtttttgtctttatgggccttatggttttctcattcatagccg |
439106 |
T |
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| Q |
218 |
atactcttggcacacatgatgtt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
439105 |
atactcttggcacacatgatgtt |
439083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 28607598 - 28607816
Alignment:
| Q |
18 |
attatttgttccattttcaattaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcatttccatctttgtggtgcatcctgtc |
117 |
Q |
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| T |
28607598 |
attatttgttccattttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatttgttttcatttgcatctttgtggtgcatcctata |
28607697 |
T |
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| Q |
118 |
attgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgctaaccaactagtgtttgtctttatgggccttatggttttctcgttcatagccg |
217 |
Q |
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| T |
28607698 |
atcgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataactg |
28607797 |
T |
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| Q |
218 |
atactcttggcacacatga |
236 |
Q |
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| T |
28607798 |
atattcttggtacacatga |
28607816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 7589922 - 7589830
Alignment:
| Q |
79 |
atatttatattcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgctaaccaa |
171 |
Q |
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| T |
7589922 |
atatttattttaatttgcatctttgtggtatattgtatcattgtcaaggccattgatcgcaagacaaaaagagattaatggaatgataaccaa |
7589830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 13658981 - 13659116
Alignment:
| Q |
26 |
ttccattttcaattaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcatttccatctttgtggtgcatcctgtcattgtaaa |
125 |
Q |
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||||||| |||||||||||| || |||||||||| | ||||||||| | |||||| | ||||||| ||| ||| |||||| ||| |||||||||| |
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| T |
13658981 |
ttccattctcaattaatggtgtaggggcaatatactcagtgttaagcaccgtcatatttgttttcatttgcatttttctggtgcgtccgatcattgtaaa |
13659080 |
T |
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| Q |
126 |
ggtcattgatcgcaagacagaaagagatgaatggaa |
161 |
Q |
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| T |
13659081 |
gttcattgatcgcaagactgaaagagatgaatggaa |
13659116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 13651557 - 13651628
Alignment:
| Q |
88 |
ttcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatgg |
159 |
Q |
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| T |
13651557 |
ttcatttgcatttttgtggtgcgtcctatcatcgtaaaggtcattgatcgcaagcttgaaagagatgaatgg |
13651628 |
T |
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