View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7673_low_12 (Length: 239)
Name: NF7673_low_12
Description: NF7673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7673_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 30657158 - 30657036
Alignment:
| Q |
101 |
gtatcaaagcaagattgaaatgaattgctccaaaacacaaagttaatgctacaacagacttgaaccaattgcatgattcaccaaatacctcatttcctcg |
200 |
Q |
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| T |
30657158 |
gtatcaaagcaagattgaaatgaattgctccaaaacacaaagttaatgctacaacagacttgaaccaattgcatgattcaccaaatacctcatttcctcg |
30657059 |
T |
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| Q |
201 |
caacactttttccatgttatgtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
30657058 |
caacactttttccatgttatgtt |
30657036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 13200212 - 13200269
Alignment:
| Q |
101 |
gtatcaaagcaagattgaaatgaattgctccaaaacacaaagttaatgctacaacaga |
158 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
13200212 |
gtatcaaagcaatattgaaatgaattgctccgaaacacaaagctaatgctacaacaga |
13200269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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