View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7673_low_2 (Length: 462)
Name: NF7673_low_2
Description: NF7673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7673_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 321 - 448
Target Start/End: Complemental strand, 27872678 - 27872551
Alignment:
| Q |
321 |
gtagaggggtattaattaatggggtagtggagaggagtgggaagagaattcaaaaaaggggtggcatgtaagtaatggtagcattaaatgcaaagaggag |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27872678 |
gtagaggggtattaattaatggggtagtggagaggagtgggaagagaattcaaaaaaggggtggcatgtaagtaatggtagcattaaatgcaaagaggag |
27872579 |
T |
|
| Q |
421 |
tagtagacaaattttggtatcttaattt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
27872578 |
tagtagacaaattttggtatcttaattt |
27872551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 27872932 - 27872820
Alignment:
| Q |
66 |
gtctgtgtccttcgtgtgtgtgactgtgagagatttatatatgccaataaagatgagatggtacgttatagtaaatttaatgcacataagaaaaaataat |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27872932 |
gtctgtgtccttcgtgtgtgtgactgtgagagatttatatatgccaataaagatgagatggtacgttatagtaaatttaatgcacataagaaaaaataat |
27872833 |
T |
|
| Q |
166 |
aattgaaagatgg |
178 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27872832 |
aattgaaagatgg |
27872820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University