View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7673_low_3 (Length: 360)
Name: NF7673_low_3
Description: NF7673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7673_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 47192926 - 47192583
Alignment:
| Q |
1 |
aatctcttccattggccaacaacgtcttaggaaaacaatcatatgtagcaacaccattgaatttgaattgaacagctttgcatttttcacaaagatccaa |
100 |
Q |
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| T |
47192926 |
aatctcttccattggccaacaacgtcttaggaaaacaatcatatgtagcaacaccattgaatttgaattgaacagctttgcatttttcacaaagatccaa |
47192827 |
T |
|
| Q |
101 |
acacaacttttgacattgcttcaagcttgtcacttttgctacatacaaatcatagccatacaactccatgttttgaagatgaagaaaaccgaaatcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47192826 |
acacaacttttgacattgcttcaagcttgtcacttttgctacatacaaatcatagccatacaactccatgttttgaagatgaagaaaaccgaaatcctca |
47192727 |
T |
|
| Q |
201 |
acgcgagcactgtcgcaagaaagatcagcaggtttaaactcaggctcacacccttgtgtccaatcattacgattcttcaacttgtaacctttcaaacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47192726 |
acgcgagcactgtcgcaagaaagatcagcaggtttaaactcaggctcacacccttgtgtccaatcattacgattcttcaacttgtaacctttcaaacaat |
47192627 |
T |
|
| Q |
301 |
aacatgttcttccattaacaggatcataactacacatgctattt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47192626 |
aacatgttcttccattaacaggatcataactacacatgctattt |
47192583 |
T |
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