View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7673_low_6 (Length: 270)
Name: NF7673_low_6
Description: NF7673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7673_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 28733928 - 28733693
Alignment:
| Q |
9 |
gaagaatatcaaaatggaagataatctatactaagaaatgtcacttcatctcaatatctcaagaaccataaagaaaacattctgtgccaaaatcatggtc |
108 |
Q |
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| T |
28733928 |
gaagaaaatcaaaatggaagataatctatactgagaaatgtcacttcatctcaatatctcaagaaccataaagaaaacattctgtgccaaaatcatggtc |
28733829 |
T |
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| Q |
109 |
aatggttttctcttagctgaagtaatgactcccaaaatcatggtcagtggtttctgtgccaaccaacaatttcttaatcacatgactataaaacacagac |
208 |
Q |
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| T |
28733828 |
aatggttttctcttagctgaagtaatgactcccaatatcatggtcagtggtttctgtgccaaccaacaatttcttattcacatgactataaaacac-gac |
28733730 |
T |
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| Q |
209 |
gccgggttgaataccaataataattggaaacaagtaa |
245 |
Q |
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| T |
28733729 |
gccggggtgaataccaataataattggaaacaagtaa |
28733693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 28727717 - 28727635
Alignment:
| Q |
9 |
gaagaatatcaaaatggaagataatctatactaagaaatgtcacttcatctcaatatctcaagaaccataaagaaaacattct |
91 |
Q |
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|||||| || ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28727717 |
gaagaaaatgaaaattgaagataatctatactgagaaatgtcacttcatctcaatatctcaagaaccataaagaaaacattct |
28727635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 28725220 - 28725148
Alignment:
| Q |
19 |
aaaatggaagataatctatactaagaaatgtcacttcatctcaatatctcaagaaccataaagaaaacattct |
91 |
Q |
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|||||| ||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
28725220 |
aaaatgaaagataatctatattgagaaatgttacttcatctcaatatttcaagaaccataaagaaaacgttct |
28725148 |
T |
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