View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7673_low_9 (Length: 247)
Name: NF7673_low_9
Description: NF7673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7673_low_9 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 438857 - 439090
Alignment:
| Q |
14 |
tggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgag |
113 |
Q |
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| T |
438857 |
tggcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgag |
438956 |
T |
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| Q |
114 |
ttttgatccattgccacaaaagtagatcggtgcaagaaacccaataccaaaatcattagtcatcgacacgaccatgtcagcaaatttaccgtgaggtaaa |
213 |
Q |
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| T |
438957 |
ttttgatccattgccacaaaagtagatcggtgcaagaaagccaataccaaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaa |
439056 |
T |
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| Q |
214 |
atcaacccgtataaaaaagccccaacaacatcat |
247 |
Q |
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| T |
439057 |
atcaacccgtataaaaaagccccaacaacatcat |
439090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 28608042 - 28607813
Alignment:
| Q |
18 |
aaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgagtttt |
117 |
Q |
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| T |
28608042 |
aaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttc |
28607943 |
T |
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| Q |
118 |
gatccattgccacaaaagtagatcggtgcaagaaacccaataccaaaatcattagtcatcgacacgaccatgtcagcaaatttaccgtgaggtaaaatca |
217 |
Q |
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| T |
28607942 |
aatccactgccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaaatca |
28607843 |
T |
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| Q |
218 |
acccgtataaaaaagccccaacaacatcat |
247 |
Q |
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| T |
28607842 |
acccgtatacaaatgcaccaacaacgtcat |
28607813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 13659245 - 13659194
Alignment:
| Q |
190 |
tcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaacaa |
241 |
Q |
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| T |
13659245 |
tcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa |
13659194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 13651931 - 13651716
Alignment:
| Q |
18 |
aaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgagtttt |
117 |
Q |
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| T |
13651931 |
aaacaaagtgcttaaaatctttggaacacataacaagattataagcacaagtgttaagggccagtttcgatggacgaatatggctttcacaatgaagcgc |
13651832 |
T |
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| Q |
118 |
gatccattgccacaaaagtagatcggtgcaagaaacccaataccaaaatcattagtcatcgacacgaccatgtcagcaaatttaccgtgaggtaaaatca |
217 |
Q |
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| T |
13651831 |
attccattgcgactaaagaagagcggggccagaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatca |
13651732 |
T |
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| Q |
218 |
acccgtataaaaaagc |
233 |
Q |
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| T |
13651731 |
acccgtacacaaaagc |
13651716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 13659419 - 13659364
Alignment:
| Q |
16 |
gcaaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgt |
71 |
Q |
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| T |
13659419 |
gcaaacaaagtgcttaaaatcttcggaacacataacaagattataataacaagtgt |
13659364 |
T |
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