View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7674_high_1 (Length: 469)
Name: NF7674_high_1
Description: NF7674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7674_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Original strand, 5851518 - 5851945
Alignment:
| Q |
17 |
atttacaacctgcaaatggattgaagtacgatgtagcttatcttgtaattatgtggttgatttatatgtaacttggtggccaagatttttcaaagctatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5851518 |
atttacaacctgcaaatggattgaagtacgatgtagcttatcttgtaattatgtggttgatttatatgtaacttggtggccaagaattttcaaagctatg |
5851617 |
T |
|
| Q |
117 |
aataattgttgtaatgtatgcatcaaaatgctgaatatacacatcattatttcacacttggtgcagcaaattatcagtctacttggcaggttgacttggc |
216 |
Q |
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| T |
5851618 |
aataattgttgtaatgtatgcatcaaaatgctgaatatacacatcattatttcacacttggtgcagcaaattatcagtctacttggcaggttgacttggc |
5851717 |
T |
|
| Q |
217 |
ttgttttggtcattcacagtctactggtgttcatgttttataggaacctactcttccccttatgaaacnnnnnnngattcaccaataataaatattttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5851718 |
ttgttttggtcattcacagtctactggtgttcatgttttataggaacctactcttccccttatgaaacaaaaaaagattcaccaataataaatattttca |
5851817 |
T |
|
| Q |
317 |
aaactattcatctaagcttagatgaaacttagttcctttacaaagaaatcagcatattgatatttcaatatatcaattgttatcccttctccttgttaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5851818 |
aaactattcatctaagcttagatgaaacttagttcctttacaaagaaatcagcatattgatatttcaatatatcaattgttatcccttctccttgttaac |
5851917 |
T |
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| Q |
417 |
aaacaaaccttgatgaattacacataca |
444 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5851918 |
aaacaaaccttgatgaattacacataca |
5851945 |
T |
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