View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7674_low_3 (Length: 452)
Name: NF7674_low_3
Description: NF7674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7674_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 14242221 - 14241793
Alignment:
| Q |
18 |
ataagtataagcacatgtacttgtatgcaagtgctatagctagttagctactatttgaaaacactttatgctaaatcgtgtatcgtatcgcagaacaaca |
117 |
Q |
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| T |
14242221 |
ataagtataagcacatgtacttgtatgcaagtgctatagctagttagctactatttgaaaacactttatgctaaatcgtgtatcgtatcgcagaacaaca |
14242122 |
T |
|
| Q |
118 |
gcggtttgttgaaattcaactatgctttctgtttcacaacactgcttgtattgtatgcgttatttttattgatgattttactcactgaatgacactgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14242121 |
gcggtttgttgaaattcaactatgctttctgtttcacaacactgcttgtattgtatgcgttatttttattgatgattttactcactgaatgacactgatt |
14242022 |
T |
|
| Q |
218 |
gttctgaaggttttagataatcctttaagcacactgagaaaggcacatcaatggagtctttagttcttcaactccatgaaatctcagctgtcaaatttgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14242021 |
gttctgaaggttttagataatcctttaagcacactgagaaaggcacatcaatggagtctttagttcttaaactccatgaaatctcagctgtcaaatttgg |
14241922 |
T |
|
| Q |
318 |
taacttcaagcttaaatccggcatctcctcaccaatttatatagatctccgccttattatatcttacccttctgtcctccgacaaatttctcaaactatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14241921 |
aaacttcaagcttaaatccggcatctcctcaccaatttatatagacctccgccttattatatcttacccttctgtcctccgacaaatttctcaaactatg |
14241822 |
T |
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| Q |
418 |
atttcctctgtctccaacaccaaactcga |
446 |
Q |
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| T |
14241821 |
atttcctctgtctccaacactaaattcga |
14241793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 410
Target Start/End: Original strand, 5032357 - 5032487
Alignment:
| Q |
280 |
gttcttcaactccatgaaatctcagctgtcaaatttggtaacttcaagcttaaatccggcatctcctcaccaatttatatagatctccgccttattatat |
379 |
Q |
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||||||||||||||||| || |||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| || || || ||||| || || || | |
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| T |
5032357 |
gttcttcaactccatgagatatcagctgtgaaattcggcaacttcaagctcaaatctggcatctcctcaccaatctacattgacctccgtctcataattt |
5032456 |
T |
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| Q |
380 |
cttacccttctgtcctccgacaaatttctca |
410 |
Q |
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| T |
5032457 |
cttatccttctctcctccagcaaatctctca |
5032487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 395
Target Start/End: Original strand, 7990537 - 7990652
Alignment:
| Q |
280 |
gttcttcaactccatgaaatctcagctgtcaaatttggtaacttcaagcttaaatccggcatctcctcaccaatttatatagatctccgccttattatat |
379 |
Q |
| |
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||||||||||||||||| || |||||||| ||||| || ||||||||||| ||||| |||||| ||||||| || || || || ||||| || || |||| |
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| T |
7990537 |
gttcttcaactccatgagatatcagctgtgaaattcggcaacttcaagctcaaatctggcatcacctcaccgatctacattgacctccgtctcatcatat |
7990636 |
T |
|
| Q |
380 |
cttacccttctgtcct |
395 |
Q |
| |
|
|||| |||||| |||| |
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|
| T |
7990637 |
cttatccttctctcct |
7990652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 27309653 - 27309617
Alignment:
| Q |
68 |
ctatttgaaaacactttatgctaaatcgtgtatcgta |
104 |
Q |
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|||||||| |||||||||| ||||||||||||||||| |
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| T |
27309653 |
ctatttgacaacactttatactaaatcgtgtatcgta |
27309617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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