View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7674_low_5 (Length: 362)
Name: NF7674_low_5
Description: NF7674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7674_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 25035400 - 25035744
Alignment:
| Q |
19 |
atgtcggtcactgacacgtgccggataccaaacactccttcaatccgaggtgtcggtgctatgatcatatacaagtctggatatatgttctattcattaa |
118 |
Q |
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| T |
25035400 |
atgtcgatcactgacacgtgccggataccaaacactccttcaatccgaggtgtcggtgctatgatcgtatacaagtctggatatatgttctattcattaa |
25035499 |
T |
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| Q |
119 |
tctacctaattccattatgcgaggtacata-----------agaaggtgatcaata---attcaatacaaaaactataaacaaaacctgcagattatatc |
204 |
Q |
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| T |
25035500 |
tctacctaattccattatgcgaggtacataccctcaattcaaaaaggtgatcaataataattcaatacaaaaactataaacaaaacctgcagattatatc |
25035599 |
T |
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| Q |
205 |
atatgtataaacttatcttactaaaacaaaaaattggatatgtttcgtttgatcattgatcaatcacttgttagctgaaattgatgtctagtttggtgaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25035600 |
atatgtataaacttatcttactaaaacaaaaaattggatatgtttcatttgatcattgatcaatcacttgttagctgaaattgatgtctagtttggtgaa |
25035699 |
T |
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| Q |
305 |
tctgttgaagctgtaaacttttcaaccttacctcaccagaccttc |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25035700 |
tctgttgaagctgtaaacttttcaaccttacctcaccagaccttc |
25035744 |
T |
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