View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7674_low_6 (Length: 262)
Name: NF7674_low_6
Description: NF7674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7674_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 1489061 - 1488836
Alignment:
| Q |
19 |
gttttctctcataatcaagtgtaccataattgtgaatctttgagattgaacaagtgacagaaactcttgctcctcctccaattacactgtcagtgtaaaa |
118 |
Q |
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| T |
1489061 |
gttttctctcataatcaagtgtaccataattgtgaatctttgagattgaacaagtgacagaaactcttgctccacctccaattccactgtcagtgtaaaa |
1488962 |
T |
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| Q |
119 |
gacattgaccctttgtttgaagggggaaagagtatgagaataagaaagtgaaagagaaactttttggttttgtaaagaagattgaatttgaagaggcgta |
218 |
Q |
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| T |
1488961 |
gacattgaccctttgtttgaagggggaaagagtatgagaataagaaagtgaaagagaaacgttttggttttgtaaagaagattgaatttgaagaggcgta |
1488862 |
T |
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| Q |
219 |
atagtagtcatcattttctgagtgtg |
244 |
Q |
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| T |
1488861 |
atagtaatcatcattttctgagtgtg |
1488836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 11834397 - 11834547
Alignment:
| Q |
19 |
gttttctctcataatcaagtgtaccataattgtgaatctttgagattgaacaagtgacagaaac---tcttgctcctcc---------tccaattacact |
106 |
Q |
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| T |
11834397 |
gttttctctcataatcaagagtaccataattgtgaatctttgaaattgaacaagtgacagaaactcttcttgctcctccaattccaattccaattccagg |
11834496 |
T |
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| Q |
107 |
gtcagtgtaaaagacattgaccctttgtttgaagggggaaagagtatgagaata |
160 |
Q |
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| T |
11834497 |
gtcagtgtaaaagacattgaccctttgtttgaaggg---aagagtatgagaata |
11834547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 11834567 - 11834612
Alignment:
| Q |
162 |
gaaagtgaaagagaaactttttggttttgtaaagaagattgaattt |
207 |
Q |
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| T |
11834567 |
gaaagtgaaagagaaacattttggttttgtaaagaagattgaattt |
11834612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 11834632 - 11834677
Alignment:
| Q |
192 |
aaagaagattgaatttgaagaggcgtaatagtagtcatcattttct |
237 |
Q |
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| T |
11834632 |
aaagaagattgaatttgaagaggcgtaatagtggtcatcattttct |
11834677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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