View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7675_high_2 (Length: 417)
Name: NF7675_high_2
Description: NF7675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7675_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 144 - 402
Target Start/End: Complemental strand, 39700580 - 39700322
Alignment:
| Q |
144 |
tgcatattaattattggacaatggagatacgacgactaaagatatttgataaacaaaccacatttagactcgccaaaaagagaaaaaattatgnnnnnnn |
243 |
Q |
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| T |
39700580 |
tgcatattaattattgaacaatggagatacgacaagtaaagatatttgataaacaaaccacatgtagattcgccaaaaagataaaattctgttttttttt |
39700481 |
T |
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| Q |
244 |
nnaacagcataaaaaattatttgatgtgacattctaattaatgacttgaattttcttccttcactactcatgagatgtaagtttgatggaggattagttg |
343 |
Q |
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| T |
39700480 |
ataacagcataaaaaattatttgatgtgacattctaatgaatgacttgaattttcttccttcaccactcatgagatgtaagtttgatggaggattagttg |
39700381 |
T |
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| Q |
344 |
gggcctataatgttgccaatgacttatgccattcatgatatgtgatcctctctggttca |
402 |
Q |
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| T |
39700380 |
gggcctataatgttgccaatgacttatgccattcatggtatgtgatcctctctggttca |
39700322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 39700718 - 39700656
Alignment:
| Q |
8 |
cactttgagaaagatttactgtgtgatcgtgagtatttttgaagtcttatatatacaatagtt |
70 |
Q |
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| T |
39700718 |
cactttgagaaagatttacgttgtgatcgtgagtatttttgaagtcttatatatacaattgtt |
39700656 |
T |
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