View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7675_high_3 (Length: 414)
Name: NF7675_high_3
Description: NF7675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7675_high_3 |
 | |
|
| [»] scaffold0604 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 639441 - 639820
Alignment:
| Q |
16 |
attgctcctcaaaaggtgattactaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatccta |
115 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
639441 |
attgctcgtgaaaaagtgattactaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatccta |
639540 |
T |
|
| Q |
116 |
ttattcttgacataatgtggtctaaggaa-gtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
639541 |
ttattcttgacataatgtggtctaaggaaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttg |
639640 |
T |
|
| Q |
215 |
aggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgatcc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
639641 |
aggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttggtcc |
639740 |
T |
|
| Q |
315 |
ttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatgg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
639741 |
ttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatgg |
639820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 825247 - 825626
Alignment:
| Q |
16 |
attgctcctcaaaaggtgattactaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatccta |
115 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825247 |
attgctcgtgaaaaagtgattactaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatccta |
825346 |
T |
|
| Q |
116 |
ttattcttgacataatgtggtctaaggaa-gtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825347 |
ttattcttgacataatgtggtctaaggaaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttg |
825446 |
T |
|
| Q |
215 |
aggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgatcc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
825447 |
aggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttggtcc |
825546 |
T |
|
| Q |
315 |
ttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatgg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825547 |
ttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatgg |
825626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 276408 - 276029
Alignment:
| Q |
16 |
attgctcctcaaaaggtgattactaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatccta |
115 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276408 |
attgctcgtgaaaaagtgattactaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatccta |
276309 |
T |
|
| Q |
116 |
ttattcttgacataatgtggtctaaggaa-gtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276308 |
ttattcttgacataatgtggtctaaggaaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttg |
276209 |
T |
|
| Q |
215 |
aggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgatcc |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
276208 |
aggctgtttaggttcaattaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttggtcc |
276109 |
T |
|
| Q |
315 |
ttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatgg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276108 |
ttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatgg |
276029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 48 - 397
Target Start/End: Complemental strand, 18189478 - 18189132
Alignment:
| Q |
48 |
tcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatcctattattcttgacataatgtggtctaaggaagta |
147 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| | |||||||||||| |
|
|
| T |
18189478 |
tcttgttaagaatgtcccaaaaagacatgtgcaaggctgtagtaatattgtggttgatgaagatcctattattcgtgacataatgagatctaaggaagta |
18189379 |
T |
|
| Q |
148 |
acaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttgaggctgtttaggttcaatcaacacatgttgaag |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || | ||||||||||||| |||| ||| |
|
|
| T |
18189378 |
acaactaatgtgttggtgggtgatgttataaaccttgaggaagaactatattctagcacttccgtttgagcaattcaagttcaatcaacacctgttcaag |
18189279 |
T |
|
| Q |
248 |
cgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgatccttggagtgacgttgtgacggacttagattataa |
347 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| ||| | | || |||||||||| ||| ||| |||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
18189278 |
ctatgactgaaatacaaggtgtagaccaacagggcatcgattttcctgatatgcggatcgttggtccttggagtgacgctgtgacagacttagactataa |
18189179 |
T |
|
| Q |
348 |
tcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
18189178 |
tcaaga---cccaacttggtatggtttaggttcttctaatgtcatggttt |
18189132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 113 - 397
Target Start/End: Original strand, 12737043 - 12737314
Alignment:
| Q |
113 |
ctattattcttgacataatgtggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgt |
212 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||| | || |
|
|
| T |
12737043 |
ctattatttttgacataatgaggtctaaggaagtaata-------tgttggtgggtgatgttataaaccttaaggaagaactatattct------tttgt |
12737129 |
T |
|
| Q |
213 |
tgaggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgat |
312 |
Q |
| |
|
|| || || ||||||||||| ||| |||||||| |||||||||||||||||||| || ||||| |||||| ||||| |||||||||||||| ||| | |
|
|
| T |
12737130 |
tggggtaattcaggttcaatcagcacttgttgaagtgatgactgaaatacaaggtggagatcaacaaagcaacgaacttcctgatatgcgcatcgttggt |
12737229 |
T |
|
| Q |
313 |
ccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12737230 |
ccttggagtgacgttgtgacggacttagattatattcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
12737314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 107 - 396
Target Start/End: Original strand, 10865770 - 10866073
Alignment:
| Q |
107 |
aagatcctattattcttgacataatgtggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcac |
206 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||| |||| | |
|
|
| T |
10865770 |
aagatcctattattctcgacataatgaaatctacggaagtaacaactgatgtgtttgtggttgatgttataaaccctgaggaagaactatattatagccc |
10865869 |
T |
|
| Q |
207 |
ttccgttgaggctgtttaggttcaatc---------------aacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactt |
291 |
Q |
| |
|
||||| |||||| ||| |||||| ||| | |||||||||||| ||||| ||||| |||| |||| ||| |||| |||||| || || |
|
|
| T |
10865870 |
ttccgctgaggcagttgaggttctatcagcacatgttgaagaagcacatgttgaagtgatgaatgaaaaacaaagtgaagacaaacatagcaacgaa-tt |
10865968 |
T |
|
| Q |
292 |
tctgatatgcgcatccttgatccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtca |
391 |
Q |
| |
|
|| |||||||||| ||| |||||||||||||| || || ||||| ||||||| ||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
10865969 |
cctcatatgcgcattgttggtccttggagtgacgcagtcacagacttggattatattcaggatcccccgtcttggtatggtttgagttcttccaatgtca |
10866068 |
T |
|
| Q |
392 |
tggtt |
396 |
Q |
| |
|
||||| |
|
|
| T |
10866069 |
tggtt |
10866073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 49046539 - 49046916
Alignment:
| Q |
16 |
attgctcctcaaaaggtgattactaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatccta |
115 |
Q |
| |
|
||||||| | |||||||||| |||||| ||||| |||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||| ||||| ||| |
|
|
| T |
49046539 |
attgctcgtgaaaaggtgatcactaaagataattttgttaagaatgtccctaaaaggcatgtgcaaggttgtagtaatattgtggttgatgaagattcta |
49046638 |
T |
|
| Q |
116 |
ttattcttgacataatgtggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttga |
215 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
49046639 |
ttattcttgacataataaggtttaagaaagtaacaactaatgtgttggtgggtgatgttataaaccttgaggaagaactatattctaactcttccgttgg |
49046738 |
T |
|
| Q |
216 |
ggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgatcct |
315 |
Q |
| |
|
||| || || ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||| || |||| |
|
|
| T |
49046739 |
ggcaattcagtttcaatcaacacatgttgaagcgatgactgaaatacaagttgaagaccaactgagcaacaaacttcttgatatgcgcatcgctggtcct |
49046838 |
T |
|
| Q |
316 |
tggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatg |
393 |
Q |
| |
|
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
49046839 |
tggaatggcgttgtgacagacttagattataatcaagatcccccatcttggtatgatttatgttcttccaatttcatg |
49046916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 107 - 397
Target Start/End: Original strand, 26473688 - 26473978
Alignment:
| Q |
107 |
aagatcctattattcttgacataatgtggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcac |
206 |
Q |
| |
|
||||||||||||||||||| |||||| | || |||||||||||||| ||||||||||| | |||||| ||||| | |||||||||||||||| || ||| |
|
|
| T |
26473688 |
aagatcctattattcttgatataatgagatccaaggaagtaacaacatatgtgttggtgagggatgttttaaacctcgaggaagaactatattttaccac |
26473787 |
T |
|
| Q |
207 |
ttccgttgaggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatc |
306 |
Q |
| |
|
|||| ||| ||| | | ||||||| || ||||||| | || ||||||||||| |||| |||||| |||||| ||||||||||||| || ||||||||| |
|
|
| T |
26473788 |
ttccattggggcagctccggttcaaccaccacatgtggtagtgatgactgaaaaacaaagtgatgcccaacaaagcaacaaactttgagacatgcgcatc |
26473887 |
T |
|
| Q |
307 |
cttgatccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
||| || ||||||||| | |||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
26473888 |
gttggtcaatggagtgacactatgacggacttagattataatcaagatcctcagacttggtatgatttaagttcttccaatgtcatggttt |
26473978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 107 - 397
Target Start/End: Original strand, 26550128 - 26550418
Alignment:
| Q |
107 |
aagatcctattattcttgacataatgtggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcac |
206 |
Q |
| |
|
||||||||||||||||||| |||||| | || |||||||||||||| ||||||||||| | |||||| ||||| | |||||||||||||||| || ||| |
|
|
| T |
26550128 |
aagatcctattattcttgatataatgagatccaaggaagtaacaacatatgtgttggtgagggatgttttaaacctcgaggaagaactatattttaccac |
26550227 |
T |
|
| Q |
207 |
ttccgttgaggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatc |
306 |
Q |
| |
|
|||| ||| ||| | | ||||||| || ||||||| | || ||||||||||| |||| |||||| |||||| ||||||||||||| || ||||||||| |
|
|
| T |
26550228 |
ttccattggggcagctccggttcaaccaccacatgtggtagtgatgactgaaaaacaaagtgatgcccaacaaagcaacaaactttgagacatgcgcatc |
26550327 |
T |
|
| Q |
307 |
cttgatccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
||| || ||||||||| | |||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
26550328 |
gttggtcaatggagtgacactatgacggacttagattataatcaagatcctcagacttggtatgatttaagttcttccaatgtcatggttt |
26550418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 3977 - 4358
Alignment:
| Q |
16 |
attgctcctcaaaaggtgattactaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagtaatattgtgcttgataaagatccta |
115 |
Q |
| |
|
||||||| | |||||||| |||||| |||||||| |||||||||||| |||||| |||| |||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
3977 |
attgctcgtgaaaaggtgtccactaaagataatcttattaagaatgtccttaaaaggcatgtgcaaggctgtagtaatattgtgtttgatgaagatccta |
4076 |
T |
|
| Q |
116 |
ttattcttgacataatgtggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttga |
215 |
Q |
| |
|
|||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
4077 |
ttatccgtgacataataaggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaaccttgaggaagaactattttctagcacttccgttgg |
4176 |
T |
|
| Q |
216 |
ggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgatcct |
315 |
Q |
| |
|
||| ||| ||||| |||||||| ||||||||| |||| |||||||||||||| |||||||| |||||| || || |||||||||||||| ||| | || |
|
|
| T |
4177 |
ggcagttcaggttaaatcaacatctgttgaagctatgattgaaatacaaggtgtagaccaacaaagcaacgaatttcctgatatgcgcatcgttggtact |
4276 |
T |
|
| Q |
316 |
tggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4277 |
tggagtgacgttgtgataaacttagattataatcaagattccccatcttggtatggtttaggttcttccaatgtcatggttt |
4358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 37 - 397
Target Start/End: Original strand, 20424564 - 20424933
Alignment:
| Q |
37 |
actaaatataatcttgttaagaatgtccctaaaagacatgagcaaggctgtagta---------atattgtgcttgataaagatcctattattcttgaca |
127 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
20424564 |
actaaagataatcttgttaagaatatccctaaaaggcatttgcaaggctgtagtattgtggctaatattgtggctgatgaagatcctattattcgtgaca |
20424663 |
T |
|
| Q |
128 |
taatgtggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttgaggctgtttaggt |
227 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
20424664 |
taatgaggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaaccttgaggaagaactatattctagcacttccgttgaggcaattcaggt |
20424763 |
T |
|
| Q |
228 |
tcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgatccttggagtgacgtt |
327 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||| |||||||| ||||||||| || ||||||||||||| ||| | |||||||||||| | |
|
|
| T |
20424764 |
tcaatcaacacctgttgaaggtatgactgaaacacaaggtgtagaccaacaaagcaacaaatttcctgatatgcgcatagttggttcttggagtgacgct |
20424863 |
T |
|
| Q |
328 |
gtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20424864 |
gtgacagacttagactataatcaagatcccccatcttggtatggtttaggttcttccaatgtcatggttt |
20424933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 155 - 397
Target Start/End: Complemental strand, 27941952 - 27941710
Alignment:
| Q |
155 |
atgtgttggtgggtgatgttataaacattgaggaagaactatattctagcacttccgttgaggctgtttaggttcaatcaacacatgttgaagcgatgac |
254 |
Q |
| |
|
|||||| |||| | |||||||||||| |||||||| |||||||||||| ||||||||||| ||| | | |||||||| || ||||||| | || |||||| |
|
|
| T |
27941952 |
atgtgtaggtgagggatgttataaactttgaggaataactatattctaccacttccgttggggcagctcaggttcaaccaccacatgtggtagtgatgac |
27941853 |
T |
|
| Q |
255 |
tgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgatccttggagtgacgttgtgacggacttagattataatcaagat |
354 |
Q |
| |
|
||||| |||| ||||||||||||| ||||| |||||| | ||||||| |||| ||| || |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27941852 |
tgaaacacaaagtgatgaccaacaaagcaataaacttccagatatgcacatcgttggtctgtggagtgacgctgtgacggacttagattataatcaagat |
27941753 |
T |
|
| Q |
355 |
cccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
|| | ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
27941752 |
cctcagccttggtatgagttaagttcttccaatgtcatggttt |
27941710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 12402366 - 12402304
Alignment:
| Q |
335 |
acttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12402366 |
acttggattatattcaagatcccccgtcttggtatggtttgagttcttccaatgtcatggttt |
12402304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 107 - 392
Target Start/End: Complemental strand, 43805625 - 43805346
Alignment:
| Q |
107 |
aagatcctattattcttgacataatgtggtctaaggaagtaacaactaatgtgttggtgggtgatgttataaacattgaggaagaactatattctagcac |
206 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
43805625 |
aagatcctattattcttgacataatgagatataaggaagtaacacctaatgtgcttgtggttgatgttataaaccttgaggaagaactatattctagccc |
43805526 |
T |
|
| Q |
207 |
ttccgttgaggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatc |
306 |
Q |
| |
|
|||||||| || | | |||||||||||||||||||||||||||||| ||||| |||| ||| |||| ||||| ||||| ||||||||||||| |
|
|
| T |
43805525 |
ttccgttggagcagctcaggttcaatcaacacatgttgaagcgatgaatgaaaaacaaagtg------aacaaagcaatgaacttcctgatatgcgcatt |
43805432 |
T |
|
| Q |
307 |
cttgatccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcat |
392 |
Q |
| |
|
||| |||||||||||||| |||||| ||||| ||||||| |||| ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
43805431 |
gttggtccttggagtgacgctgtgacagacttggattatattcaatatcccccgtcttggtatggtttgagttcttccaatgtcat |
43805346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 213 - 396
Target Start/End: Complemental strand, 31288945 - 31288762
Alignment:
| Q |
213 |
tgaggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatccttgat |
312 |
Q |
| |
|
|||||| ||| |||||| ||||||| ||||||||||||||| ||||| ||| |||| ||| ||||||||||||||||| ||||||||||||| ||| | |
|
|
| T |
31288945 |
tgaggcagttcaggttctatcaacaaatgttgaagcgatgaatgaaaagcaaagtgaagacaaacagagcaacaaacttcctgatatgcgcataattggt |
31288846 |
T |
|
| Q |
313 |
ccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatggtt |
396 |
Q |
| |
|
|||||||| ||| |||||| ||||| |||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
31288845 |
ccttggagcgacactgtgacagacttgaattatattcaagatcccccgtcttggtatggtttgagttcttccaatgtcatggtt |
31288762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 390
Target Start/End: Original strand, 20424938 - 20425057
Alignment:
| Q |
271 |
gaccaacagagcaacaaactttctgatatgcgcatccttgatccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatg |
370 |
Q |
| |
|
|||||||| || | |||| || |||||||||||||| ||| |||||||||||| || || || ||||| || |||| ||||||||| | || ||||| || |
|
|
| T |
20424938 |
gaccaacatagtagcaaatttcctgatatgcgcatcgttggtccttggagtgatgtcgtaacagacttggactatattcaagatccactatattggtgtg |
20425037 |
T |
|
| Q |
371 |
gtttatgttcttccaatgtc |
390 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
20425038 |
gtttagaatcttccaatgtc |
20425057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 21408144 - 21408533
Alignment:
| Q |
16 |
attgctcctcaaaaggtgattactaaatataatcttgttaagaatgtccctaaaagacatga------gcaaggctgtagtaatattgtgcttgataaag |
109 |
Q |
| |
|
||||||| | ||||||||| |||||| |||||| |||||||||||| |||||||| |||| ||||| | ||||||| |||||| | || |||| |
|
|
| T |
21408144 |
attgctcgtgaaaaggtgacaactaaagataatcatgttaagaatgttcctaaaaggcatggtcaagtgcaagaccgtagtaaaattgtggtggacaaag |
21408243 |
T |
|
| Q |
110 |
atcctattattcttgacataatgtggtctaaggaagtaacaacta--atgtgttggtgggtgatgttataaacattgaggaagaactatattctagcact |
207 |
Q |
| |
|
||| ||||||| | ||||||||| | ||||||||||||| ||||| ||||||| || | ||||||||||||| | |||||||||||||| |||| | |
|
|
| T |
21408244 |
atcatattattgtcgacataatgagatctaaggaagtaagaactataatgtgtttgtcgttgatgttataaaccattaggaagaactatatcctagtgtt |
21408343 |
T |
|
| Q |
208 |
tccgttgaggctgtttaggttcaatcaacacatgttgaagcgatgactgaaatacaaggtgatgaccaacagagcaacaaactttctgatatgcgcatcc |
307 |
Q |
| |
|
|| |||||||| ||| |||||||||||||||||||||||| ||||| ||||| |||| |||| | |||||| ||||| ||||| |||||||||||| |
|
|
| T |
21408344 |
tcagttgaggcagttcaggttcaatcaacacatgttgaagtgatgaatgaaaaacaaagtgaagtccaacatagcaatgaacttcttgatatgcgcattg |
21408443 |
T |
|
| Q |
308 |
ttgatccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttcttccaatgtcatggttt |
397 |
Q |
| |
|
||| ||||||| | | | |||||| ||||| ||||||| ||||||| ||| ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
21408444 |
ttggtccttggcgcggcactgtgacagacttggattatatgcaagatctcccgtcttggtatggtttaagttcttcaaatgtcatggttt |
21408533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 1043114 - 1042998
Alignment:
| Q |
281 |
gcaacaaactttctgatatgcgcatccttgatccttggagtgacgttgtgacggacttagattataatcaagatcccccatcttggtatggtttatgttc |
380 |
Q |
| |
|
||||| |||||||||||||| |||| ||| || ||||||||| | ||||||| |||||||| |||||||||||| ||||| |||||| | |||| |
|
|
| T |
1043114 |
gcaaccaactttctgatatgaacatcgttggtctatggagtgaccctatgacggatttagattaaaatcaagatccctagccttggcatggttcaagttc |
1043015 |
T |
|
| Q |
381 |
ttccaatgtcatggttt |
397 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
1043014 |
ttccaatatcatggttt |
1042998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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