View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7675_high_4 (Length: 373)
Name: NF7675_high_4
Description: NF7675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7675_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 8863859 - 8863512
Alignment:
| Q |
20 |
ggacttaggtcaagagagtggatttttcgctgcttacttggtatgtgacaaatcaaccagaccctttataaatttgttcgtgattacatgtacatgaaaa |
119 |
Q |
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| T |
8863859 |
ggacttaggtcaagagagtggatttttcgctgcttgcttggtatgtgacaaatcaaccagacactttataaatttgttcgtgattacatgtacatgaaaa |
8863760 |
T |
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| Q |
120 |
cacatctttcactttccttctctgataaacattcattcataattccatacagatacaaacagaggtcttataaggaatgcatatgacatattgcatga-- |
217 |
Q |
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| T |
8863759 |
cacatctttcactttccttctctaatgaacattcattcataattccatacagatacaaacagaggtcttataaggaatgcatatgacatattgcatgaca |
8863660 |
T |
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| Q |
218 |
-------catgtatcaagtcttgtttttaagttcttgaaaggtttgtgagttgaaaccaatgttttaaatcaaagttgcaaggtcacaatttttaatatt |
310 |
Q |
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| T |
8863659 |
tggaaagcatgtatcaagtcttgtttttaagttcttgaaaggtttttgagttgaaaccaatgttttaaatcaaagtcgcaagattacaatttttaacatt |
8863560 |
T |
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| Q |
311 |
tgcggaaaattacaatcaaatatggctaatgcaattacaattgtcaca |
358 |
Q |
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| T |
8863559 |
tgcggaaaattacaatcacatatggctaatgcaattacaattgtcaca |
8863512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 8874883 - 8874956
Alignment:
| Q |
97 |
tcgtgattacatgtacatgaaaacacatctttcactttccttctct--gataaacattcattcataattccata |
168 |
Q |
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| T |
8874883 |
tcgtgattaggtgtgcatgaaaacatatctttcactttccttctctaatataaacattcatacataattccata |
8874956 |
T |
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