View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7675_high_9 (Length: 238)
Name: NF7675_high_9
Description: NF7675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7675_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 36598556 - 36598706
Alignment:
| Q |
74 |
catctatattttgaattagagcataactaaattggtttaaaattggtgttaattacatgatgaaattcaaataggcaaccgaattgcacattaagttaag |
173 |
Q |
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| T |
36598556 |
catctatattttgaattagagcataactaaattggtttaaaattggtgttaattacatgatgaaattcaaataggcaaccgaattgcacattaagttaag |
36598655 |
T |
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| Q |
174 |
ggggtgctataattcaaatcaactaatgtcacctttggccaagagaaaact |
224 |
Q |
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| T |
36598656 |
ggggtgctataattcaaatcaactaatgtcacctttggccaagagaaaact |
36598706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36598328 - 36598400
Alignment:
| Q |
1 |
ctaactttaacaaggaaaactcgaattgtgtgagattgtatttaaattaactccgattttaaaaggttaatta |
73 |
Q |
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| T |
36598328 |
ctaactttaacaaggaaaactcgaattatgtgagattgcatttaaattaactccgatttcaaaaggttaatta |
36598400 |
T |
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