View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7675_low_11 (Length: 219)

Name: NF7675_low_11

Description: NF7675

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7675_low_11

[»] chr4 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 182; E-Value: 1e-98

Query Start/End: Original strand, 18 - 203

Target Start/End: Complemental strand, 37024250 - 37024065

Alignment:

Q	18	aaaggagacggcaaagagggtgataacgttatgtttcggacaccaatgtcccagccagttggagaacgagtcaccttccctccaattgcacggccaagta	117	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37024250	aaaggagatggcaaagagggtgataacgttatgtttcggacaccaatgtcccagccagttggagaacgagtcaccttccctccaattgcacggccaagta	37024151	T

Q	118	tctaatcaaattaacattatataaagtaagttaattaatggtaggaaaaacttgcacgtaaaatatattatattaataatagaata	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37024150	tctaatcaaattaacattatataaagtaagttaattaatggtaggaaaaacttgcacgtaaaatatattatattaataatagaata	37024065	T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 57 - 128

Target Start/End: Original strand, 35902676 - 35902747

Alignment:

Q	57	acaccaatgtcccagccagttggagaacgagtcaccttccctccaattgcacggccaagtatctaatcaaat	128	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	35902676	acaccaatgtcccaaccagtaggagagcgacccacctttcctcccaatgcacggccaagtaccttatcaaat	35902747	T

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