View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7675_low_8 (Length: 246)
Name: NF7675_low_8
Description: NF7675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7675_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 8863107 - 8863347
Alignment:
| Q |
5 |
gagatgaatttaatgcttgtgtatattttattagcttccaaagtttcacggctaagttattgtgtaggacacaaaccattnnnnnnnggaaatttacagt |
104 |
Q |
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| T |
8863107 |
gagatgaatttaatgcttgtgtataatttattagcttccaaagtttcacggctaaggtgttgtgtaggacacaaaccattcccccccggaaatttacagt |
8863206 |
T |
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| Q |
105 |
attatattggacacagtttaacaccatattggtgagacatataggtcatgttcatggttcaataaattccataacacatttatttgagtcacaaccaaac |
204 |
Q |
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| T |
8863207 |
attatat-ggacacaatttaacaccatattggtgagacatataggtcatgttcatggttcaataaattcaataacacatttatttgagtcacaaccaaac |
8863305 |
T |
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| Q |
205 |
caaaggtttagaaattgtgaccccaattgagacagtaaaaaa |
246 |
Q |
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| T |
8863306 |
caaaagtttagaaattgtgaccccaattgagacagtaaaaaa |
8863347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 8878604 - 8878477
Alignment:
| Q |
93 |
gaaatttacagtattatattggacacagtttaacaccatattggtgagacatata-----ggtcatgttcatggttcaataaattccataacacatttat |
187 |
Q |
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| T |
8878604 |
gaaacttacagtattatat-ggacccaatttaacaccatattgttgagacatataaattaggtcatgtgcatggttcaataaattctacaacacatttat |
8878506 |
T |
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| Q |
188 |
ttgagtcacaaccaaaccaaaggtttagaaa |
218 |
Q |
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| T |
8878505 |
t--agtcacaaccaaaccaaaactttagaaa |
8878477 |
T |
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