View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7675_low_9 (Length: 241)
Name: NF7675_low_9
Description: NF7675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7675_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39700690 - 39700908
Alignment:
| Q |
1 |
cgatcacaacgtaaatctttctcaaagtgtttattctctctctaatacaaatcaaattgaatacaaaaccttcccacagatgggattccatttcaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
39700690 |
cgatcacaacgtaaatctttctcaaagtgtttattctctctctaatacaaatcaaattgaatacaaaaccttcctacaaatgggattccatttcaaacag |
39700789 |
T |
|
| Q |
101 |
tataattgtcatgaaacataggaagtaatctaagttctctttccatgatgatgatccctacttaattcctataacttcttggaagtgtgtgctatcttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39700790 |
tataattgtcatgaaacataggaagtaatctaagttctctttcc---atgatgatccctacttaattcctataacttcttggaagtgtgtgctatcttat |
39700886 |
T |
|
| Q |
201 |
agttatccatgcatataatata |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39700887 |
agttatccatgcatataatata |
39700908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University