View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7676_high_2 (Length: 437)
Name: NF7676_high_2
Description: NF7676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7676_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 52340416 - 52339999
Alignment:
| Q |
1 |
agacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggtaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52340416 |
agacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggtaga |
52340317 |
T |
|
| Q |
101 |
tacctctctcattgtcgtgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattgatg |
200 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52340316 |
tacctctctcattgtcatgggcaattttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattgata |
52340217 |
T |
|
| Q |
201 |
ataataatttcccacatagtagacttataatcattccagaaacaatgattaaattcattaaaatgcatggatatgatactagcatgcacactataattca |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52340216 |
ataataatttcctacatagtagacttataatcattccagaaacaatgattaaattcattaaaatgcatgaatatgatactagcatgcacactataattca |
52340117 |
T |
|
| Q |
301 |
atcaggtctcaccatttatcttagatgacaatatgtttggaaatagtgtattatgaaagtgacactacagtgagatatgtggaaaatttgagcttagtta |
400 |
Q |
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| T |
52340116 |
attaggtctcaccatttatcttagatgacaatatgtttggaaatagtgtattatgaaagtgacactacagtgagatatgtggaaaatttgagcttagtta |
52340017 |
T |
|
| Q |
401 |
gattgatttatttgtata |
418 |
Q |
| |
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| T |
52340016 |
gattgatttatttgtata |
52339999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 418
Target Start/End: Complemental strand, 9184608 - 9184191
Alignment:
| Q |
2 |
gacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggtagat |
101 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
9184608 |
gacatcgctattccatatcttgccgcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcttggacattgttacaggtggat |
9184509 |
T |
|
| Q |
102 |
acctctctcattgtcgtgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattgatga |
201 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9184508 |
acctctctaattgtcatgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattgataa |
9184409 |
T |
|
| Q |
202 |
taataatttcccacatagtagacttataatcattccagaaacaatgattaaattcattaaaatgcatggatatgatactagcatgcacactataattcaa |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9184408 |
taataatttcccacatagtagactgataatcattccagaaacaatgattaaattcattaaaatgcatggatatgatactagcatgcacactataattcaa |
9184309 |
T |
|
| Q |
302 |
-tcaggtctcaccatttatcttagatgacaatatgtttggaaatagtgtattatgaaagtgacactacagtgagatatgtggaaaatttgagcttagtta |
400 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9184308 |
tttaggtctcaccatttatcttagatgacaatatgtttggaaatagtgtattatgaaagtgacactacagtgagatatgtggaaaatttgagcttagtta |
9184209 |
T |
|
| Q |
401 |
gattgatttatttgtata |
418 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
9184208 |
gattgatttatttgtata |
9184191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 9181010 - 9180917
Alignment:
| Q |
5 |
atcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggta |
98 |
Q |
| |
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|||||| ||||||||||||| | ||||||||||| ||| || |||| | ||||| || ||||||||||||||| ||||| |||||||||| |
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| T |
9181010 |
atcgctgttccatatcttgcagagaaatggaaggccaaatctgctcatgaattaacggataccgttcccttcttcagagacatcgttacaggta |
9180917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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