View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7676_low_1 (Length: 494)

Name: NF7676_low_1
Description: NF7676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7676_low_1
NF7676_low_1
[»] chr1 (4 HSPs)
chr1 (20-486)||(34034914-34035380)
chr1 (302-362)||(6231819-6231879)
chr1 (298-368)||(39347966-39348036)
chr1 (297-337)||(15581286-15581326)
[»] chr8 (2 HSPs)
chr8 (302-368)||(39561544-39561610)
chr8 (301-354)||(5290644-5290697)
[»] chr5 (4 HSPs)
chr5 (303-362)||(14295513-14295572)
chr5 (302-363)||(40205077-40205138)
chr5 (304-368)||(7319407-7319471)
chr5 (304-368)||(18906343-18906407)
[»] chr3 (3 HSPs)
chr3 (297-336)||(30923896-30923935)
chr3 (308-389)||(23793564-23793645)
chr3 (297-337)||(31010434-31010474)
[»] chr2 (3 HSPs)
chr2 (297-368)||(32821810-32821881)
chr2 (298-389)||(11513874-11513969)
chr2 (302-366)||(43456710-43456774)
[»] chr7 (1 HSPs)
chr7 (297-337)||(12234887-12234927)
[»] chr6 (2 HSPs)
chr6 (297-337)||(2117435-2117475)
chr6 (302-366)||(31583682-31583746)


Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Original strand, 34034914 - 34035380
Alignment:
Q  20 gaatcaatgtttttgcaaaaaactttctgagaacgacactgcagttcttaaccttgtaacccttgtgaaggaccctggaaacgattcagcagagctggcg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34034914 gaatcaatgtttttgcaaaaaactttctgagaacgacactgcagtttttaaccttgtaacccttgtgaaggaccctggaaacgattcagcagagctggcg 34035013  T
Q  120 atgaaaattttgatggagctttttgaaataaatgaaaacagcattgtcactgctgctaattgtggctggtataagccactagctgatcgcatgattcgag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34035014 atgaaaattttgatggagctttttgaaataaatgaaaacagcattgtcactgctgctaattgtggctggtataagccactagctgatcgcatgattcgag 34035113  T
Q  220 gtaagaaggttgaatgttttcttgttgtaacatgtttattgtcatgagatgaatggttttcattatgttgaagatagtatggcatgtctataagctgttt 319  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34035114 gtaagaaggttgaatgttttcttgttgtaacatgtttatcgtcatgagatgaatggttttcattatgttgaagatagtatggcatgtctataagctgttt 34035213  T
Q  320 tcagcttaattctataagtttgtcaggatagcttacgaaaacaatttattatatgaacacaatttgacttcnnnnnnnnaatataaattgcatatacata 419  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||    
T  34035214 tcagcttaattctataagtttgtcaggatagcttacgaaaacaacttattatatgaacacaatttgacttcttttttttaatataaattgcatatacata 34035313  T
Q  420 atcacttatatgccattccctagggtcatagtagattatatagttaactattctgctgcttcttctc 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34035314 atcacttatatgccattccctagggtcatagtagattatatagttaactattctgctgcttcttctc 34035380  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 6231819 - 6231879
Alignment:
Q  302 catgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaaca 362  Q
    |||||| |||| |||||||||||||| |||||||||||  ||||| |||||||||||||||    
T  6231819 catgtccataaactgttttcagcttatttctataagttcttcaggttagcttacgaaaaca 6231879  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 39347966 - 39348036
Alignment:
Q  298 atggcatgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaatttat 368  Q
    |||||||||| ||||| ||||||||||||| ||| ||||| ||  |||||||| ||| |||||||| ||||    
T  39347966 atggcatgtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttat 39348036  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 15581326 - 15581286
Alignment:
Q  297 tatggcatgtctataagctgttttcagcttaattctataag 337  Q
    |||| ||||||||||||||||||||||| || |||||||||    
T  15581326 tatgacatgtctataagctgttttcagcctatttctataag 15581286  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 39561544 - 39561610
Alignment:
Q  302 catgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaatttat 368  Q
    ||||||| | |||||||||||||||| ||| ||||| || ||| |||||||||||||||||| ||||    
T  39561544 catgtctgttagctgttttcagcttatttccataagcttttcatgatagcttacgaaaacaacttat 39561610  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 5290697 - 5290644
Alignment:
Q  301 gcatgtctataagctgttttcagcttaattctataagtttgtcaggatagctta 354  Q
    ||||||| ||||| | |||||||||| ||||||||||||| ||| |||||||||    
T  5290697 gcatgtccataagttcttttcagcttcattctataagtttttcacgatagctta 5290644  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 14295572 - 14295513
Alignment:
Q  303 atgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaaca 362  Q
    ||||| ||||||||||||||||||| ||||| ||| |   ||||||||||||||||||||    
T  14295572 atgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaaca 14295513  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 40205077 - 40205138
Alignment:
Q  302 catgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaa 363  Q
    |||||| |||| |||||||||||||| ||||||||| |   |||||||||||| ||||||||    
T  40205077 catgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaa 40205138  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 7319471 - 7319407
Alignment:
Q  304 tgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaatttat 368  Q
    |||||||||| || |||||||||| || ||||||||   || ||||||||||||||||| |||||    
T  7319471 tgtctataagttgctttcagcttatttttataagttctccaagatagcttacgaaaacagtttat 7319407  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 18906407 - 18906343
Alignment:
Q  304 tgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaatttat 368  Q
    |||| ||||| ||||||||||||| ||| ||||| || ||| ||||||||| ||||||| |||||    
T  18906407 tgtccataagttgttttcagcttatttcgataagcttttcaagatagcttatgaaaacagtttat 18906343  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 30923896 - 30923935
Alignment:
Q  297 tatggcatgtctataagctgttttcagcttaattctataa 336  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  30923896 tatgacatgtctataagctgttttcagcttatttctataa 30923935  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 23793645 - 23793564
Alignment:
Q  308 tataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaatttattatatgaacacaatttgactt 389  Q
    |||||| ||||||||||||| ||||||||| ||  || ||||||||| |||| |||||  |||||||||  || ||||||||    
T  23793645 tataagttgttttcagcttatttctataagctttccaagatagcttatgaaaccaattgcttatatgaaatcattttgactt 23793564  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 31010474 - 31010434
Alignment:
Q  297 tatggcatgtctataagctgttttcagcttaattctataag 337  Q
    |||| |||||| ||||||||||||||||||||||| |||||    
T  31010474 tatgacatgtccataagctgttttcagcttaattccataag 31010434  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 32821881 - 32821810
Alignment:
Q  297 tatggcatgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaatttat 368  Q
    |||| |||||| ||||||||||||||| ||| ||||||||| |  | ||||||||||| ||||||| |||||    
T  32821881 tatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaacagtttat 32821810  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 11513969 - 11513874
Alignment:
Q  298 atggcatgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaattta----ttatatgaacacaatttgactt 389  Q
    |||||||| ||||||||| ||||||||||| ||| | |||||   || ||||||||| |||||||| |||    ||||||||| ||||||||||||    
T  11513969 atggcatgcctataagctattttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactt 11513874  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 43456710 - 43456774
Alignment:
Q  302 catgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaattt 366  Q
    |||||| |||| |||||||||||||| ||| ||| |||| ||| ||||||||||  |||||||||    
T  43456710 catgtccataaactgttttcagcttatttccatatgtttttcaagatagcttacagaaacaattt 43456774  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 12234887 - 12234927
Alignment:
Q  297 tatggcatgtctataagctgttttcagcttaattctataag 337  Q
    |||| |||||||||||||||||||||||||| ||| |||||    
T  12234887 tatgacatgtctataagctgttttcagcttatttccataag 12234927  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 2117475 - 2117435
Alignment:
Q  297 tatggcatgtctataagctgttttcagcttaattctataag 337  Q
    |||||||||||||||||||||||| |||||| ||| |||||    
T  2117475 tatggcatgtctataagctgtttttagcttatttcaataag 2117435  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 31583746 - 31583682
Alignment:
Q  302 catgtctataagctgttttcagcttaattctataagtttgtcaggatagcttacgaaaacaattt 366  Q
    |||||| ||||| |||||||| |||| ||| ||||| || || |||||||||| |||||||||||    
T  31583746 catgtccataagttgttttcaacttatttccataagcttttcgggatagcttatgaaaacaattt 31583682  T

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