View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7676_low_4 (Length: 308)
Name: NF7676_low_4
Description: NF7676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7676_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 8314844 - 8315132
Alignment:
| Q |
1 |
actgaggatcataccagctgaaaaacttgtgggagtagctaatgggacactacatgaaccagaagaaataatatttaattaatgtgtaagtcgaggtgga |
100 |
Q |
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| T |
8314844 |
actgatgatcataccagctgaaaaacttgtgggagtagctgatgggacactacatgaaccagaagaaataatatttaatttatgtgtaagtcgaggtgga |
8314943 |
T |
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| Q |
101 |
gaattttaaattcttggcggacatagtagtgatggacatggttgagtgtccagtgaccctaggaaaaccttttctagctacttcaaaagctagaattaat |
200 |
Q |
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| T |
8314944 |
gaattttaaattcttggcggacatagtagtgatggacatggctgagtgtccagtgaccctaggaaaaccttttctagctacttcaatagctagaattaac |
8315043 |
T |
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| Q |
201 |
ttagagtataaagagattgtgcttaggtcaaaaagtgaatacttgatagttgatacatcatatctcaccggaaaacatgaagcaagatg |
289 |
Q |
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| T |
8315044 |
ttagagtataaagagattgtgcttaggtcaaaaggtgaatacttgatagctgatatgtcatatctcaccggaaaacatgaggcaagatg |
8315132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 138
Target Start/End: Complemental strand, 6040812 - 6040782
Alignment:
| Q |
108 |
aaattcttggcggacatagtagtgatggaca |
138 |
Q |
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| T |
6040812 |
aaattcttggcggacatagtagtgatggaca |
6040782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 248
Target Start/End: Complemental strand, 16857618 - 16857462
Alignment:
| Q |
91 |
tcgaggtggagaattttaaattcttggcggacatagtagtgatggacatggttgagtgtccagtgaccctaggaaaaccttttctagctacttcaaaagc |
190 |
Q |
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| T |
16857618 |
tcgaggtagagacttttaaattcttgggggacatagtagtgatggacatggctgagtgtctagtgaccttaggcacacattttctagctacttcaaaatc |
16857519 |
T |
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| Q |
191 |
tagaattaatttagagtataaagagattgtgcttaggtcaaaaagtgaatacttgata |
248 |
Q |
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| T |
16857518 |
ttgaatcaacttggagtataaagagattgggcttaggtc-aaaggtgaatacttgata |
16857462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 23339144 - 23339311
Alignment:
| Q |
81 |
aatgtgtaagtcgaggtggagaattttaaattcttggcggacatagtagtgatggacatggttgagtgtccagtgaccctaggaaaaccttttctagcta |
180 |
Q |
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| T |
23339144 |
aatgtgcaagtcgaggtggaaaatttcaaactcttgacggacatagtattgatggacacggatgaatatccagtgaccttaggcagaccttttctagcta |
23339243 |
T |
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| Q |
181 |
cttcaaaagctagaattaatttagagtataaagagattgtgcttaggtcaaaaagtgaatacttgata |
248 |
Q |
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| T |
23339244 |
cttcaaaagctcagatcaacttggagcataaataaattatgctgaggtcaaaaggtaaatacttgata |
23339311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 14126049 - 14126205
Alignment:
| Q |
88 |
aagtcgaggtggagaattttaaattcttggcggacatagtagtgatggacatggttgagtgtccagtgaccctaggaaaaccttttctagctacttcaaa |
187 |
Q |
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||||||||||||||||||| |||||||||| ||||||||| || |||||||||| |||||||||| ||||| |||| | || ||| ||||||| ||| |
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| T |
14126049 |
aagtcgaggtggagaatttcaaattcttggtggacatagtggtaatggacatggctgagtgtccaatgaccttaggcagacatttcctagctatcggaaa |
14126148 |
T |
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| Q |
188 |
agctagaattaatttagagtataaagagattgtgcttaggtcaaaaagtgaatactt |
244 |
Q |
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| T |
14126149 |
agctcgaataaacttggagaacaacgagattgtgctcatgtcaaaaggtaaatactt |
14126205 |
T |
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