View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7677_high_17 (Length: 224)
Name: NF7677_high_17
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 24381537 - 24381727
Alignment:
| Q |
18 |
aacacaacaaccttgtctcaatcttcttcaaacttcaattccattacatcttcatcttctccaagacgttgttataaactacaaacc------ggtgatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24381537 |
aacacaacaaccttgtctcaatcttcttcaaacttcaattccattacatcttc------tccaagacgttgttataaactacaaaccaaacatggtgatg |
24381630 |
T |
|
| Q |
112 |
gcttcattggatgtgtaccaaaccatcttcttctctaacacaaccacaaccccttcacgtttcaatctccaccctaataaaccacccaccttttctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24381631 |
gcttcattggatgtgtaccaaaccatcttcttctctgacacaaccacaaccccttcacgtttcaacctccaccctaataaaccacccaccttttctt |
24381727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 35153752 - 35153570
Alignment:
| Q |
20 |
cacaacaaccttgtctcaatcttcttcaaacttcaattccattacatcttcatcttctccaagacgttgttataaactacaaaccggtgatggcttcatt |
119 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||| |
|
|
| T |
35153752 |
cacagcaaccttgtcccaatcttcttcaaacttcaattccattacatcttcatcttctccaaaaccttgttagaaacat------ggtgatggcttcatt |
35153659 |
T |
|
| Q |
120 |
ggatgtgtaccaaaccatcttcttctctaacacaaccacaaccccttcacgtttcaatctccaccctaataaaccacccaccttttctt |
208 |
Q |
| |
|
|| ||||| |||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35153658 |
gggtgtgtcccaagccatctttttctccaacacaaccacaacctcttcacgtttcaatctccacccgaataaaccacccaccttttctt |
35153570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University