View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7677_high_19 (Length: 207)

Name: NF7677_high_19
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7677_high_19
NF7677_high_19
[»] chr3 (27 HSPs)
chr3 (1-192)||(11768913-11769104)
chr3 (1-190)||(10376044-10376233)
chr3 (1-190)||(10076947-10077139)
chr3 (1-190)||(9838542-9838731)
chr3 (1-190)||(9849420-9849609)
chr3 (1-179)||(10195365-10195543)
chr3 (1-179)||(10088482-10088660)
chr3 (1-190)||(8860967-8861156)
chr3 (1-190)||(10434243-10434432)
chr3 (14-190)||(10580282-10580458)
chr3 (1-190)||(10888987-10889176)
chr3 (11-190)||(11160226-11160405)
chr3 (1-190)||(11131225-11131414)
chr3 (1-180)||(10363997-10364176)
chr3 (1-190)||(11149053-11149242)
chr3 (1-180)||(13160671-13160850)
chr3 (1-180)||(13332595-13332774)
chr3 (1-180)||(13170722-13170901)
chr3 (4-180)||(13289356-13289532)
chr3 (1-180)||(13343780-13343959)
chr3 (1-49)||(10500375-10500423)
chr3 (1-49)||(10527157-10527205)
chr3 (1-49)||(10031825-10031873)
chr3 (1-49)||(10126750-10126798)
chr3 (1-49)||(10184064-10184112)
chr3 (1-49)||(10260520-10260568)
chr3 (1-49)||(10663348-10663396)
[»] chr2 (1 HSPs)
chr2 (1-190)||(26906578-26906767)
[»] chr8 (2 HSPs)
chr8 (1-189)||(44957908-44958096)
chr8 (1-43)||(11484842-11484884)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-179)||(50007-50182)
[»] chr6 (1 HSPs)
chr6 (13-178)||(31679944-31680109)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-180)||(146138-146317)
scaffold0002 (1-180)||(136087-136266)
[»] chr4 (1 HSPs)
chr4 (1-49)||(17853146-17853194)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 6e-76; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 11769104 - 11768913
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| | ||||| ||||    
T  11769104 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcaaacctaatatatctttattttgtgcaaaaagttgcaggctt 11769005  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgtttct 192  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| || |||||||||||||| |||||||||||    
T  11769004 tcacacatgatcttcatatgggaattgatctctccatagatgtttttaaaaggggatgaaagtaagttccacacctgattagttttgtttct 11768913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 10376044 - 10376233
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||||||| |||     
T  10376044 ttcatttaccactgaacttgaaggtgttctacgagaaactctaccacttttagtttgcagaccaagtatatctttatactgtgcaaagaattgcaggcta 10376143  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    |||||||||| |||||| || |||||||||||||  |||||| | ||||||||||| |||||||| ||| |||||||||| |||||||||    
T  10376144 tcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttt 10376233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 10077139 - 10076947
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaa---ctctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaag 97  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||     
T  10077139 ttcatttaccactgaacttgaaggtgttctacgagaaattactctagcaattttagtttgcagaccaagtacatctttattctgtgcaaacaattgcaac 10077040  T
Q  98 ctttcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    |||||||||||||||||| | || ||||||||||||   |||||| | |||||||||||||||||||| ||| |||||||||| |||||||||    
T  10077039 ctttcacacatgatcttcgtttgagaattgatctctttgtagaagctattaaaaggagatgaaaggaagttcaacacctgattagttttgttt 10076947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 9838731 - 9838542
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | | |||||||||     
T  9838731 ttcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagcta 9838632  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    |||||||||||||||||||||||||||||||||   || ||  | ||||||||||| |||||||| |||||||||||||| |||||||||    
T  9838631 tcacacatgatcttcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttccacacctgattagttttgttt 9838542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 9849609 - 9849420
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | | |||||||||     
T  9849609 ttcatttacccctgaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagcta 9849510  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    |||||||||||||||||||||||||||||||||   || ||  | ||||||||||| |||||||| |||||||||||||| |||||||||    
T  9849509 tcacacatgatcttcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttccacacctgattagttttgttt 9849420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 10195543 - 10195365
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||||||||||||||||||||| |||||| | ||||| || ||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10195543 ttcatttaccactgaacttgaaggagttctatgtgaaacccttgcgtttttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctt 10195444  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgat 179  Q
    ||||||||||||||||| || |||||||||||||  |||||| | |||||||||||||||||||| |||  ||||||||    
T  10195443 tcacacatgatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcatcacctgat 10195365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 10088660 - 10088482
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||||||||| ||||||||||| |||||| | ||||| || ||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10088660 ttcatttaccaccgaacttgaaggagttctatgtgaaacccttgcgattttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctt 10088561  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgat 179  Q
    ||||||||||||||||| || |||||||||||||  |||||| | |||||||||||||||||||| |||  ||||||||    
T  10088560 tcacacatgatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcatcacctgat 10088482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 8861156 - 8860967
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||| || |||||||||||||| ||||||||||||||| || || |||||||||||| |||||| |||||||||| |||||| || | |||||||||     
T  8861156 ttcattaactactgaacttgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcgaaaatttgcaagcta 8861057  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    ||||||||||||||||| ||||||||||||||||  |||||| | ||||||||||| |||||||| |||||||||||||| |||||||||    
T  8861056 tcacacatgatcttcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttccacacctgattagttttgttt 8860967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 10434243 - 10434432
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||| ||||| |||||||||||  ||||| ||||||||||  ||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||    
T  10434243 ttcattgaccacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctt 10434342  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    ||||||||||||||||| || |||||||||||||  |||||  | |||||||||||||||||||| ||| |||||||||| |||||||||    
T  10434343 tcacacatgatcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttt 10434432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 10580458 - 10580282
Alignment:
Q  14 gaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctttcacacatgatct 113  Q
    ||||||||||| |||| | |||||||||||||||| |||||||||| |||||| | ||||||||  | |||||||||||||| | |||||||||||||||    
T  10580458 gaacttgaaggagttccatgagaaactctagcactcttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 10580359  T
Q  114 tcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    ||||||||||||||||||||| ||||||| | ||||||||||| |||||||| |||||||||||||| |||||||||    
T  10580358 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttgttt 10580282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 10889176 - 10888987
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||| || |||||||||||||| ||||||||||||||| || || |||||||||||| |||||| |||||||||| ||||||||| | |||||||||     
T  10889176 ttcattaactactgaacttgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcaaaaagttgcaagcta 10889077  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    | ||||||||||||||| ||||||||||||||||  |||||| | ||||||||||| ||||||||  ||||||||||| | |||||||||    
T  10889076 ttacacatgatcttcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgttt 10888987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 11160226 - 11160405
Alignment:
Q  11 actgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctttcacacatga 110  Q
    |||||||||||||| ||||||||||||||| || || ||||| |||||| |||||| |||||||||| |||||| || | ||||||||| ||||||||||    
T  11160226 actgaacttgaaggggttctacgagaaactttaccaattttactttgcaaaccaaggatatctttatgttgtgcgaaaagttgcaagctatcacacatga 11160325  T
Q  111 tcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    ||||||| |||||||||||||||| ||||||| | ||||||||||| ||||||||  ||||||||||| | |||||||||    
T  11160326 tcttcatttgggaattgatctctctatagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgttt 11160405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 11131225 - 11131414
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||| ||||| ||||| |||||||||||| |  ||| |||||||||||||||||| | |||||| |||||||| ||||||||||| | ||||| | |     
T  11131225 ttcattaaccacagaactagaaggtgttctatggaaaattctagcacttttagtttgtaaaccaaggatatctttgttttgtgcaaaaatttgcaggttg 11131324  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    ||||||||| |||| || |||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||| |||||||||    
T  11131325 tcacacatggtcttaatttgggaattgatctctccatagatgtttttaaaaggagaagaaaggaagttccagacctgattagttttgttt 11131414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 10363997 - 10364176
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||||||||||||||||||||||||| ||||| || |  ||||||||||||| || ||||||||||||  | | | ||||   ||||| ||||    
T  10363997 ttcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatcttttctcttttcaaaatgttgcaggctt 10364096  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgatt 180  Q
    |||||||||||||||||||||||||||||||||| ||||||| | || ||||||||| ||||||| ||||||||||||||    
T  10364097 tcacacatgatcttcatctgggaattgatctctctatagaagctattgaaaggagataaaaggaagttccacacctgatt 10364176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 11149053 - 11149242
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||| ||||| ||||| |||||||||||| |  ||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | ||||| | |     
T  11149053 ttcattaaccacagaactagaaggtgttctatggaaaattctagcacttttagtttgcaaaccaaggatatctttgttttgtgcaaaaatttgcaggttg 11149152  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    ||||||||| ||||||| ||||||||||||||||  |||| | | ||||||||||| ||||||||  ||||||||||| | |||||||||    
T  11149153 tcacacatggtcttcatttgggaattgatctctctgtagatggtgttaaaaggagaagaaaggaagctccacacctgactagttttgttt 11149242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13160850 - 13160671
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||| |||||||||||| |||||  |||||||||| || ||   ||||||||  ||||| |||||| | | ||||||||| | |||||  |||    
T  13160850 ttcatttaccattgaacttgaaggcgttcttagagaaactctcgcgctcacagtttgcaagccaaggatatctctttgttgtgcaaaaagttgcagcctt 13160751  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgatt 180  Q
    | |||||| |||||||| || |||||||||||||||||||  ||||||||||||||||||| ||  ||||| ||||||||    
T  13160750 tgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgatt 13160671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13332774 - 13332595
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||| |||||||||||| |||||| |||||||||| || ||   ||||||||  ||||| |||||| | | ||||||||| | |||||  |||    
T  13332774 ttcatttaccattgaacttgaaggcgttctaagagaaactctcgcgctcacagtttgcaagccaagaatatctctctgttgtgcaaaaagttgcagcctt 13332675  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgatt 180  Q
    | |||||| |||||||| || |||||||||||||||||||  |||||||||||||| |||| ||  ||||| ||||||||    
T  13332674 tgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagacgaaaagaggttccaaacctgatt 13332595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13170901 - 13170722
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||| |||||||||||| |||||  ||||||||||  | ||   ||||||||  ||||| |||||| | | ||||||||| | |||||  |||    
T  13170901 ttcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctt 13170802  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgatt 180  Q
    | |||||| |||||||| || |||||||||||||||||||  |||||||||||| |||||| ||  ||||| ||||||||    
T  13170801 tgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgatt 13170722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 13289532 - 13289356
Alignment:
Q  4 atttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctttca 103  Q
    |||||||| |||||||||||| |||||| ||||||||||  | ||   ||||||||  ||||| |||||| | | ||||||||| |  ||||  |||| |    
T  13289532 atttaccattgaacttgaaggcgttctaagagaaactctccctctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagctgcagcctttga 13289433  T
Q  104 cacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgatt 180  Q
    ||||| |||||||| || |||||||||||||||||||   |||||||||||||||||| ||  ||||| ||||||||    
T  13289432 cacataatcttcatttgtgaattgatctctccatagagagttttaaaaggagatgaaaagaggttccaaacctgatt 13289356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13343959 - 13343780
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||| ||||||||||||||||||  ||||||||||  | ||   ||||||||  ||||| |||||| | | ||||||||| |  ||||  |||    
T  13343959 ttcatttaccattgaacttgaaggtgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaatctgcagcctt 13343860  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgatt 180  Q
    | |||||| |||||||| || |||||||||||||||||||  |||||||| ||||| |||| ||  ||||| ||||||||    
T  13343859 tgacacataatcttcatttgtgaattgatctctccatagagatttttaaacggagacgaaaagaggttccaaacctgatt 13343780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10500423 - 10500375
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcactt 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10500423 ttcatttaccactgaacttgaaggtgttctacgagaaactctaccactt 10500375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10527205 - 10527157
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcactt 49  Q
    |||||||||||||||||||||||| ||||||||||||| |||| |||||    
T  10527205 ttcatttaccactgaacttgaaggggttctacgagaaaatctatcactt 10527157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10031873 - 10031825
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcactt 49  Q
    ||||||||||||||||||||||||   |||| ||||||||||| |||||    
T  10031873 ttcatttaccactgaacttgaaggcagtctatgagaaactctaccactt 10031825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10126798 - 10126750
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcactt 49  Q
    ||||||||||||||||||||||||   |||| ||||||||||| |||||    
T  10126798 ttcatttaccactgaacttgaaggcagtctatgagaaactctaccactt 10126750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10184112 - 10184064
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcactt 49  Q
    ||||||||||||||||||||||||   |||| ||||||||||| |||||    
T  10184112 ttcatttaccactgaacttgaaggcagtctatgagaaactctaccactt 10184064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10260568 - 10260520
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcactt 49  Q
    ||||||||||||||||||||||||   |||| ||||||||||| |||||    
T  10260568 ttcatttaccactgaacttgaaggcagtctatgagaaactctaccactt 10260520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10663396 - 10663348
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcactt 49  Q
    ||||||||||||||||||||||||   |||| ||||||||||| |||||    
T  10663396 ttcatttaccactgaacttgaaggcagtctatgagaaactctaccactt 10663348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 26906767 - 26906578
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| ||||    
T  26906767 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcaaaccaaggatatctttatgttgtgcaaacaattgcaggctt 26906668  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgttt 190  Q
    |||||||| |||||||| || |||||||||||||  |||||| | |||||||||||||||||||| ||| |||||||||| |||||||||    
T  26906667 tcacacattatcttcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcaacacctgattagttttgttt 26906578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 44957908 - 44958096
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||||||||||  |||||||| | ||||| |  |    
T  44957908 ttcattaacccctgaacttgaaggtgttctatgagaaactctagcacttttagtttccaaaccaattatatctttatgctgtgcaaaaagttgcagggat 44958007  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgattggttttgtt 189  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  44958008 tcacacataatcttcatttgagaattgatctctccatagaagtttttaaaaggagatgaaaggaagttccagacctgattagttttgtt 44958096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11484884 - 11484842
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactcta 43  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  11484884 ttcattcaccactgaacttgatggtgttctacgagaaactcta 11484842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 50007 - 50182
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||||||||||||||||||||||||| ||||| || |  ||||||||||||| || ||||||||||||  ||| | |||| | ||||| ||||    
T  50007 ttcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatcttttcttttttcaaaaagttgcaggctt 50106  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgat 179  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||| ||| |||  ||||||||    
T  50107 tcacacatgatcttcatctgggaattgatctctccat---agtttttaaaagaagatgaaaagaagttcatcacctgat 50182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 31679944 - 31680109
Alignment:
Q  13 tgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctttcacacatgatc 112  Q
    ||||||||||||||||||| || |||| ||| |||||  ||||||||  ||||| |||||||| | ||||||||| | ||| |  ||||||  |||  ||    
T  31679944 tgaacttgaaggtgttctaagaaaaaccctaccacttacagtttgcaacccaaggatatctttttgttgtgcaaaaagttggagcctttcaatcatactc 31680043  T
Q  113 ttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctga 178  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  31680044 ttcatttgggaattgatctctccatacaagttttgaaaaggagatgaaaggaaattccaaacctga 31680109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 146138 - 146317
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||| |||||||||||| |||||  ||||||||||  | ||   ||||||||  ||||| |||||| | | ||||||||| | |||||  |||    
T  146138 ttcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctt 146237  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgatt 180  Q
    | |||||| |||||||| || |||||||||||||||||||  ||||||||||||||||||| ||  ||||| ||||||||    
T  146238 tgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgatt 146317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 136087 - 136266
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagtttgcagaccaagtatatctttattttgtgcaaacaattgcaagctt 100  Q
    ||||||||||| |||||||||||| |||||  ||||||||||  | ||   ||||||||  ||||| |||||| | | ||||||||| | |||||  |||    
T  136087 ttcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctt 136186  T
Q  101 tcacacatgatcttcatctgggaattgatctctccatagaagtttttaaaaggagatgaaaggaaattccacacctgatt 180  Q
    | |||||| |||||||| || |||||||||||||||||||  |||||||||||| |||||| ||  ||||| ||||||||    
T  136187 tgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgatt 136266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17853146 - 17853194
Alignment:
Q  1 ttcatttaccactgaacttgaaggtgttctacgagaaactctagcactt 49  Q
    |||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  17853146 ttcatttaccacggaacttgaaggggttctacgagaaactctaccactt 17853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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