View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7677_high_20 (Length: 206)
Name: NF7677_high_20
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 22384597 - 22384438
Alignment:
| Q |
19 |
tcatcatcttatctcattcacataaacatcacacaaatgataattcttaactctagccacatcttatccaaatttgctaactagtcccttaacttcttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22384597 |
tcatcatcttatctcattcacataaacatcacacaaatgataattcttaactctagccacatcttgtccaaatttgctaactagtcccttaacttcttct |
22384498 |
T |
|
| Q |
119 |
tttttaaccaaaggttgaacccaaaaccaaatggttaagaaattatatatacacttgtgctacactatatt |
189 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
22384497 |
att-----------ttgaacccaaaaccaaatggttaagaaattatatatatacttgtgctgcactatatt |
22384438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University