View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7677_high_3 (Length: 574)
Name: NF7677_high_3
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 41198699 - 41198364
Alignment:
| Q |
19 |
tcaacttgaaagtcaaataaggggtctttatcttgatgtaaaatagatatgaaaattgaaaaccaacacattcatcatagcaaacaatgattcatcagca |
118 |
Q |
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| T |
41198699 |
tcaacttgaaagtcaaataaggggtctttatcttgatgtaaaatagatatgaaaattgaaaaccaacacattcatcatagcaaacaatgattcatcagca |
41198600 |
T |
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| Q |
119 |
aaaaatcaaatatcaggcatgaaaagtttagcaattatataaattgaatacagtgatgatgaaattcataccatttatcttctttgagaattcatcccac |
218 |
Q |
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| T |
41198599 |
aaaaatcaaatatcaggcatgaaaagtttagcaattatataaattgaatacagtgatgatgaaattcataccatttatcttctttgagaattcatcccac |
41198500 |
T |
|
| Q |
219 |
caatctacaacaccctctttctcagatgacccagaagcagaatcattattattgtcataactcttctctgtctttcttctctttttgattcctctcacag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41198499 |
caatctacaacaccctctttctcagatgacccagaagcagaatcattattattgtcataactcttctctgtctttcttctctttttgattcctctcacag |
41198400 |
T |
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| Q |
319 |
gacccatcacaacaagttaattgaatcagaaatttt |
354 |
Q |
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| T |
41198399 |
gacccatcacaacaagttaattgaatcagaaatttt |
41198364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 423 - 563
Target Start/End: Complemental strand, 41198295 - 41198155
Alignment:
| Q |
423 |
ttcatcactatcataaattcataatatatgcacatatatatagagagagtaataacacaacacttataaatcaacaacacaaaccttagagaatgatgga |
522 |
Q |
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| T |
41198295 |
ttcatcactatcataaattcataatatatgcacatatatatagagagagtaataacacaatacttataaatcaacaacacaaaccttagagaatgatgga |
41198196 |
T |
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| Q |
523 |
cagttaacatatatttttgatgttataacaataagaataat |
563 |
Q |
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| T |
41198195 |
cagttaacatatatttttgatgttataacaataagaataat |
41198155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 186 - 346
Target Start/End: Complemental strand, 41208515 - 41208349
Alignment:
| Q |
186 |
ataccatttatcttctttgagaattcatcccaccaatctacaacaccctctttctcagatgacccagaagcagaatca------ttattattgtcataac |
279 |
Q |
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| T |
41208515 |
ataccgttgatcttctttgacaattcatcccaccaatctacaagaccctctttctcagatgacccagaagcagaaccagaaccgttattattgtcatgtg |
41208416 |
T |
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| Q |
280 |
tcttctctgtctttcttctctttttgattcctctcacaggacccatcacaacaagttaattgaatca |
346 |
Q |
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| T |
41208415 |
tcttctctgtctttcttctcttcttggttcctctcacaggacccatcacaacaagttaattgaatca |
41208349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 423 - 559
Target Start/End: Complemental strand, 41208274 - 41208145
Alignment:
| Q |
423 |
ttcatcactatcataaattcataatatatgcacatatatatagagagagtaataacacaacacttataaatcaa-caacacaaaccttagagaatgatgg |
521 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||| |||||||||||| |||||||||||| |
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| T |
41208274 |
ttcatcactatcataaattcataatatatatacatatata------gagtaataagacaacacttataagtcaaacaacacaaacct-agagaatgatgg |
41208182 |
T |
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| Q |
522 |
acagttaacatatatttttgatgttataacaataagaa |
559 |
Q |
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|| |||| ||||||| |||||||||||||||||||||| |
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| T |
41208181 |
accgtta-catatatgtttgatgttataacaataagaa |
41208145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 41208590 - 41208525
Alignment:
| Q |
55 |
tgtaaaatagatatgaaaattgaaaaccaacacattcatcatagcaaacaatgattcatcagcaaaa |
121 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
41208590 |
tgtaaaatagatatgaaa-ttgaaaaccaacacattcatcatagcaaacaatgatgcatcaacaaaa |
41208525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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