View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7677_high_8 (Length: 339)
Name: NF7677_high_8
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 49276783 - 49276464
Alignment:
| Q |
1 |
gttatttccctagagaagacacacggtggaagcttcctcgaccaacaatggagaagaacaaaaccgatgctccaattcaaatcacgactgagaagattct |
100 |
Q |
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| T |
49276783 |
gttatttccctagagaagacacacagtggaagcttcctcgaccaacaatggagaagaacaaaaccgatgctccaattcaaatcacaactgagaagattct |
49276684 |
T |
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| Q |
101 |
tatcgaagctaaggaactccaagagaccaaaatctgcactccgaaacaaaaatgcccacgttccgtttctgaagttgattacttaaaccacacgctatta |
200 |
Q |
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| T |
49276683 |
tatcgaagctaaggaactccaagagaccaaaatctgcactccgaaacaaaaatgcccacgttccgtttctgaagttgatgacttaaaccacacgctatta |
49276584 |
T |
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| Q |
201 |
aattactcatgcaagattgtggtatttgaaaacgaagtgagggaaaatcctttcaactatgattcctggtttgaatatatacgattggaagaaagtgtag |
300 |
Q |
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| T |
49276583 |
aattactcatgcaagattgtggtatttgaaaacgaagtgagggaaaatcctttcaactatgattcctggtttgaatatatacgattggaagaaagtgtag |
49276484 |
T |
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| Q |
301 |
gggataagtaaaaaactagg |
320 |
Q |
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| T |
49276483 |
gggataaggaaaaaactagg |
49276464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 169 - 320
Target Start/End: Complemental strand, 49280172 - 49280021
Alignment:
| Q |
169 |
ctgaagttgattacttaaaccacacgctattaaattactcatgcaagattgtggtatttgaaaacgaagtgagggaaaatcctttcaactatgattcctg |
268 |
Q |
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| T |
49280172 |
ctgaagttgattacttgaaccacacgctattaaattacccatgcaagattgtggcatttgaaaaagaagcgagggaaaatcctttcaactatgattcctg |
49280073 |
T |
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| Q |
269 |
gtttgaatatatacgattggaagaaagtgtaggggataagtaaaaaactagg |
320 |
Q |
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| T |
49280072 |
gttaagctatatacgattggaagaaagtgtgggggatgaggaaaaaactagg |
49280021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 49280274 - 49280186
Alignment:
| Q |
34 |
ttcctcgaccaacaatggagaagaacaaaaccgatgctccaattcaaatcacgactgagaagattcttatcgaagctaaggaactccaa |
122 |
Q |
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||||||||||||||| || ||| |||||||||||||| |||||||||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
49280274 |
ttcctcgaccaacaacggtgaacaacaaaaccgatgcaccaattcaaatcacaactgagctgattcttatcgaagataaggaactccaa |
49280186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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