View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7677_high_9 (Length: 334)

Name: NF7677_high_9
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7677_high_9
NF7677_high_9
[»] chr5 (5 HSPs)
chr5 (7-320)||(28859939-28860252)
chr5 (31-309)||(28874520-28874798)
chr5 (58-314)||(28828926-28829182)
chr5 (58-309)||(28854592-28854843)
chr5 (60-293)||(27368599-27368832)
[»] chr1 (13 HSPs)
chr1 (58-237)||(6497778-6497957)
chr1 (58-293)||(6515066-6515301)
chr1 (61-233)||(6510736-6510908)
chr1 (58-293)||(47716305-47716540)
chr1 (91-293)||(6525236-6525438)
chr1 (75-293)||(47711554-47711772)
chr1 (58-304)||(47758441-47758687)
chr1 (60-234)||(47770897-47771071)
chr1 (63-293)||(47774790-47775020)
chr1 (75-304)||(47744058-47744287)
chr1 (58-236)||(6503113-6503291)
chr1 (151-293)||(47701302-47701444)
chr1 (94-233)||(47627160-47627299)
[»] scaffold0341 (2 HSPs)
scaffold0341 (61-233)||(12416-12588)
scaffold0341 (58-236)||(4792-4970)
[»] chr8 (1 HSPs)
chr8 (75-304)||(11224741-11224970)
[»] chr2 (1 HSPs)
chr2 (106-224)||(34218965-34219083)
[»] chr6 (1 HSPs)
chr6 (152-224)||(20083991-20084063)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 28860252 - 28859939
Alignment:
Q  7 tttcgtggtagctaaaacgcgggtgactttgttatgtatgtagattcactgaagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggta 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860252 tttcgtgatagctaaaacgcgggtgactttgttatgtatgtagattcactgaagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggta 28860153  T
Q  107 ttgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860152 ttgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgc 28860053  T
Q  207 taagatttcagattttggcatggcaagactaattctattggatcaaacccaagcaaatacaagtagagttgttggaacctagtaagtgttagattatgtt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860052 taagatttcagattttggcatggcaagactaattctattggatcaaacccaagcaaatacaagtagagttgttggaacctagtaagtgttagattatgtt 28859953  T
Q  307 tgatcttacatatt 320  Q
    ||||||||||||||    
T  28859952 tgatcttacatatt 28859939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 28874798 - 28874520
Alignment:
Q  31 gactttgttatgtatgtagattcactgaagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttc 130  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  28874798 gactttgttatgtatgtagatccactgaagaaagcacaattagattgggagaagcgctacaaaatcattcaaggcattgctcgaggcgttctttatcttc 28874699  T
Q  131 atgaggattctcgactgcgtattatacaccgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggc 230  Q
    ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  28874698 atggggattcaagactgcgtattatacaccgcgatctcaaagcaagcaacattctcttagacgaagacgtgaatgctaagatctcagattttggcatggc 28874599  T
Q  231 aagactaattctattggatcaaacccaagcaaatacaagtagagttgttggaacctagtaagtgttagattatgtttga 309  Q
    |||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28874598 aagacttattcttgtggatcaaacccaagcaaatacaagtagagttgttgaaacctagtaagtgttagattatgtttga 28874520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 58 - 314
Target Start/End: Complemental strand, 28829182 - 28828926
Alignment:
Q  58 aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac 157  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||| || |||||||    
T  28829182 aagaaagcacaattagattgggaaaagcgctacaaaatcattcaaggtattactcgaggtgttctttatcttcatgaagattctcgactacgcattatac 28829083  T
Q  158 accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaaccca 257  Q
    |||| ||||| |||||||||||||||||| |||| | ||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||||| ||    
T  28829082 accgtgatcttaaagcaagcaacattctcttagatggagacatgaatgctaagatagcagattttggcatggcaagactaattcttgtggatcaaacaca 28828983  T
Q  258 agcaaatacaagtagagttgttggaacctagtaagtgttagattatgtttgatctta 314  Q
    |||||||||||||||| |||||||||||||||||||  || ||| ||||||| ||||    
T  28828982 agcaaatacaagtagaattgttggaacctagtaagtaataaattttgtttgacctta 28828926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 309
Target Start/End: Complemental strand, 28854843 - 28854592
Alignment:
Q  58 aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac 157  Q
    |||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||| || |||||||    
T  28854843 aagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatac 28854744  T
Q  158 accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaaccca 257  Q
    |||| |||||||||||| |||| |||||| |||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||| ||    
T  28854743 accgtgatctcaaagcaggcaatattctcttagatgaaaacatgaatgctaagatatcagatttcggcatggcaagactaattcttgtggatcaaacaca 28854644  T
Q  258 agcaaatacaagtagagttgttggaacctagtaagtgttagattatgtttga 309  Q
    || |||||||||||| ||||||||||| |||||||| ||| |||||||||||    
T  28854643 agaaaatacaagtagtgttgttggaacttagtaagtattatattatgtttga 28854592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 60 - 293
Target Start/End: Complemental strand, 27368832 - 27368599
Alignment:
Q  60 gaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacac 159  Q
    |||| ||||||| | |||| ||| ||||||||| |||||  ||||||||||||||||  ||||||| ||||| |||||||||||  |||| |||||||||    
T  27368832 gaaaacacaattgaattggcaaacgcgctacaatatcataaaaggtattgctcgaggtcttctttatcttcacgaggattctcgcttgcgcattatacac 27368733  T
Q  160 cgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaacccaag 259  Q
    || ||||||||||||||||| |||||  |||||||||| |||||| ||||||| || ||||||||  ||||||||| | || |  | | ||||||  |||    
T  27368732 cgtgatctcaaagcaagcaatattcttttagacgaagagatgaatcctaagatatccgattttggattggcaagacgatttgttatcggtcaaactgaag 27368633  T
Q  260 caaatacaagtagagttgttggaacctagtaagt 293  Q
     || ||||| |||| | |||||||||||||||||    
T  27368632 gaagtacaaatagaatcgttggaacctagtaagt 27368599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 6497957 - 6497778
Alignment:
Q  58 aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac 157  Q
    |||||||| ||||||| |||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |    
T  6497957 aagaaagcgcaattaaattgggaaatgcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattc 6497858  T
Q  158 accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagacta 237  Q
    | || |||||||||||||| ||||||||| |||| ||||| |||||| ||||||| || |||||||||||||||||||||    
T  6497857 atcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaagatatctgattttggcatggcaagacta 6497778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 6515301 - 6515066
Alignment:
Q  58 aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac 157  Q
    |||||||||||||||| |||||||| |||||||| |||||||  |||||||||||||||| |||||||||| ||||||||||||||| ||||| |||| |    
T  6515301 aagaaagcacaattaaattgggaaaggcgctacacaatcattttaggtattgctcgaggcattctttacctccatgaggattctcgagtgcgtgttattc 6515202  T
Q  158 accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaaccca 257  Q
    | || ||||||||||||||||| |||||| ||||  ||   |||||| |||||||  | ||||||||||||||||||||  ||    |||| ||||||||    
T  6515201 atcgtgatctcaaagcaagcaatattctcttagataaacggatgaatcctaagatagctgattttggcatggcaagactttttggtgtggaccaaaccca 6515102  T
Q  258 agcaaatacaagtagagttgttggaacctagtaagt 293  Q
     | ||| |||| |||| |||| ||||||||||||||    
T  6515101 ggaaaacacaaatagaattgtgggaacctagtaagt 6515066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 6510908 - 6510736
Alignment:
Q  61 aaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacacc 160  Q
    ||||| ||||||| ||||| || ||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| ||| |||| || |    
T  6510908 aaagcgcaattaaattggggaaggcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactacgtgttattcatc 6510809  T
Q  161 gcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaag 233  Q
    | ||||||||||||||||| |||||| | || ||||| |||||| |||||||  | |||||||||||||||||    
T  6510808 gtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaag 6510736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 47716540 - 47716305
Alignment:
Q  58 aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac 157  Q
    |||||||||||||||   ||||||| ||||||||||||||||  |||||||||| ||||| |||||||||||||| ||||||||| ||| ||||||||||    
T  47716540 aagaaagcacaattagactgggaaaggcgctacaaaatcattggaggtattgctagaggccttctttaccttcatcaggattctcaacttcgtattatac 47716441  T
Q  158 accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaaccca 257  Q
    | || ||||| |||||  | ||||||||| |||||||| |  ||||| |||| || ||||||||||| || || |||||| ||||  | |||||||| ||    
T  47716440 atcgtgatcttaaagcgggtaacattctcttagacgaaaaattgaatcctaaaatatcagattttggtatcgccagactacttcttgtcgatcaaactca 47716341  T
Q  258 agcaaatacaagtagagttgttggaacctagtaagt 293  Q
    || |||||||| || | | |||||||| ||||||||    
T  47716340 agtaaatacaaataaaatcgttggaacatagtaagt 47716305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 91 - 293
Target Start/End: Original strand, 6525236 - 6525438
Alignment:
Q  91 aaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagcaagcaacattctcctag 190  Q
    |||||||||  ||||| |||||||||  ||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||| |||    
T  6525236 aaaatcattgtaggtactgctcgaggaattctttaccttcatgaggattctcggctgcgtattattcatcgtgatctcaaagcaagcaatattctcttag 6525335  T
Q  191 acgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaacccaagcaaatacaagtagagttgttggaacctagta 290  Q
    | ||||| |||||| |||||||  |||||||||||||||| |||||  ||    |||| ||||| || | ||||||||  ||| |||| |||||||||||    
T  6525336 atgaagagatgaatcctaagatagcagattttggcatggctagactgtttgatgtggaccaaactcaggaaaatacaaacagaattgtgggaacctagta 6525435  T
Q  291 agt 293  Q
    |||    
T  6525436 agt 6525438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 75 - 293
Target Start/End: Complemental strand, 47711772 - 47711554
Alignment:
Q  75 ttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagca 174  Q
    |||||||| ||||||||||||||||  |||||| ||| ||||| |||||||||||||||||||||||| ||| ||||||||||| || ||||| ||||||    
T  47711772 ttgggaaaggcgctacaaaatcattggaggtatagctagaggccttctttaccttcatgaggattctcaacttcgtattatacatcgtgatcttaaagca 47711673  T
Q  175 agcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaacccaagcaaatacaagtagag 274  Q
    || ||||||||| | || ||| |  ||||| |||| || ||||| |||||||| || |||||| ||||  | |||||||| |||| |||||||| || |     
T  47711672 agtaacattctcttggatgaaaagttgaatcctaaaatatcagactttggcatagccagactacttcttatcgatcaaactcaagtaaatacaaataaaa 47711573  T
Q  275 ttgttggaacctagtaagt 293  Q
    | |||||||| ||||||||    
T  47711572 tcgttggaacatagtaagt 47711554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 58 - 304
Target Start/End: Complemental strand, 47758687 - 47758441
Alignment:
Q  58 aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac 157  Q
    ||||||||||| ||   |||||||| |||||| |||||||||  |||||||||| ||||| ||||||||||||| |||||||||| ||| ||||||||||    
T  47758687 aagaaagcacagttggattgggaaaggcgctataaaatcattggaggtattgctagaggccttctttaccttcacgaggattctcaacttcgtattatac 47758588  T
Q  158 accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaaccca 257  Q
    | || ||||| ||||| || ||||||||| |||||||| |  ||||| |||| || ||||||||||| ||||| |||||  ||||  | ||| |||| ||    
T  47758587 atcgtgatcttaaagcgagtaacattctcttagacgaaaagttgaatcctaaaatatcagattttggaatggccagactccttcttgttgatgaaactca 47758488  T
Q  258 agcaaatacaagtagagttgttggaacctagtaagtgttagattatg 304  Q
    || |||||||| || | | |||||||| |||||||| ||||| ||||    
T  47758487 agtaaatacaaataaaatcgttggaacatagtaagtattagaatatg 47758441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 47770897 - 47771071
Alignment:
Q  60 gaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacac 159  Q
    |||||||||| | | |||| ||||||||||| | || ||   |||||||| ||||||  ||||||| ||||||||||||||||| || || |||||||||    
T  47770897 gaaagcacaactgaattggcaaaagcgctacgatattataagaggtattgttcgaggtcttctttatcttcatgaggattctcgcctacgaattatacac 47770996  T
Q  160 cgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaaga 234  Q
    || ||| |||||||||||||||||||| ||||||| || |||||| ||||||| || ||||||||  ||||||||    
T  47770997 cgtgatatcaaagcaagcaacattctcttagacgatgagatgaatcctaagatatctgattttggattggcaaga 47771071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 293
Target Start/End: Original strand, 47774790 - 47775020
Alignment:
Q  63 agcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgc 162  Q
    ||||||||| | |||||||||||||||  | |||||  || |||||| ||||||  || |||| ||||||||||||||||| || || |||||||||||     
T  47774790 agcacaattgaattgggaaaagcgctatgatatcataaaatgtattgttcgaggtcttatttatcttcatgaggattctcgcctccgcattatacaccgt 47774889  T
Q  163 gatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaacccaagcaa 262  Q
    ||||||||||| ||||| |||||| ||||||| |  |||||| |||| || || ||||||||  |||| ||| |  || |  | |||||||| |||| ||    
T  47774890 gatctcaaagctagcaatattctcttagacgacgggatgaatcctaaaatatccgattttggattggcgagattgtttgttattgatcaaactcaaggaa 47774989  T
Q  263 atacaagtagagttgttggaacctagtaagt 293  Q
    ||||||||| | |||||||||||||||||||    
T  47774990 atacaagtaaaattgttggaacctagtaagt 47775020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 304
Target Start/End: Complemental strand, 47744287 - 47744058
Alignment:
Q  75 ttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagca 174  Q
    |||||||| ||||||||||||||||  ||| |||||  ||||  |||||||||||||| ||||||||| ||| ||||||||||| || ||||| ||||||    
T  47744287 ttgggaaaggcgctacaaaatcattggaggaattgcaagaggtcttctttaccttcatcaggattctcaacttcgtattatacatcgtgatcttaaagca 47744188  T
Q  175 agcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaacccaagcaaatacaagtagag 274  Q
    || ||||||||| | |||||| |  ||||| |||| || || |||||||| || || |||||| ||||  | |||||||| ||||  ||||||| || |     
T  47744187 agtaacattctcttggacgaaaagttgaatcctaaaatatctgattttggtattgccagactacttcttgtcgatcaaactcaagttaatacaaataaaa 47744088  T
Q  275 ttgttggaacctagtaagtgttagattatg 304  Q
    | |||||||| |||||||| ||||| ||||    
T  47744087 tcgttggaacatagtaagtattagaatatg 47744058  T

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Target: chr1; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 6503291 - 6503113
Alignment:
Q  58 aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac 157  Q
    |||| ||| ||||||| ||||| ||||||||||  |||||||  |||||||||||||||| |||| ||||||||  ||||||||||| | ||| |||| |    
T  6503291 aagagagcgcaattaaattggggaaagcgctacctaatcattttaggtattgctcgaggcattctataccttcaccaggattctcgatttcgtgttattc 6503192  T
Q  158 accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagact 236  Q
    |  | |||||||||||||| || |||||| | || ||| | |||||| |||||||  | ||||||||||||||||||||    
T  6503191 atagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaagatagctgattttggcatggcaagact 6503113  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 293
Target Start/End: Complemental strand, 47701444 - 47701302
Alignment:
Q  151 attatacaccgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatc 250  Q
    |||||||| || ||||| |||||||| ||||||||| | || ||| | |||||| |||| || ||||||||||| ||||| || ||||||||  ||||||    
T  47701444 attatacatcgtgatcttaaagcaagtaacattctcttggatgaaaaaatgaatcctaaaatatcagattttggtatggccaggctaattcttgtggatc 47701345  T
Q  251 aaacccaagcaaatacaagtagagttgttggaacctagtaagt 293  Q
    |||| |||| |||||||  || ||| ||||| || ||||||||    
T  47701344 aaactcaagtaaatacagataaagtcgttgggacatagtaagt 47701302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 47627160 - 47627299
Alignment:
Q  94 atcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagcaagcaacattctcctagacg 193  Q
    |||||| |||| |||||||||||  |||||||||||||||| |||||||| ||    ||||||||||| ||| | ||| |||||||  |||| |||||      
T  47627160 atcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagata 47627259  T
Q  194 aagacatgaatgctaagatttcagattttggcatggcaag 233  Q
    |  | |||||| | || || || |||||||||||||||||    
T  47627260 acaatatgaatccaaaaatctctgattttggcatggcaag 47627299  T

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Target: scaffold0341 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 12588 - 12416
Alignment:
Q  61 aaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacacc 160  Q
    ||||| ||||||| ||||| || ||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| ||| |||| || |    
T  12588 aaagcgcaattaaattggggaaggcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactacgtgttattcatc 12489  T
Q  161 gcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaag 233  Q
    | ||||||||||||||||| |||||| | || ||||| |||||| |||||||  | |||||||||||||||||    
T  12488 gtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaagatagctgattttggcatggcaag 12416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 4970 - 4792
Alignment:
Q  58 aagaaagcacaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatac 157  Q
    |||| ||| ||||||| ||||| ||||||||||  |||||||  |||||||||||||||| |||| ||||||||  ||||||||||| | ||| |||| |    
T  4970 aagagagcgcaattaaattggggaaagcgctacctaatcattttaggtattgctcgaggcattctataccttcaccaggattctcgatttcgtgttattc 4871  T
Q  158 accgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagact 236  Q
    |  | |||||||||||||| || |||||| | || ||| | |||||| |||||||  | ||||||||||||||||||||    
T  4870 atagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaagatagctgattttggcatggcaagact 4792  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 304
Target Start/End: Original strand, 11224741 - 11224970
Alignment:
Q  75 ttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagca 174  Q
    |||||||| ||||||||||||||||  ||| |||||  ||||  |||||||||||||| ||||||||| ||| ||||||||||| || ||||| ||||||    
T  11224741 ttgggaaaggcgctacaaaatcattggaggaattgcaagaggtcttctttaccttcatcaggattctcaacttcgtattatacatcgtgatcttaaagca 11224840  T
Q  175 agcaacattctcctagacgaagacatgaatgctaagatttcagattttggcatggcaagactaattctattggatcaaacccaagcaaatacaagtagag 274  Q
    || ||||||||| | |||||| |  ||||| |||| || || |||||||| || || |||||| ||||  | |||||||| ||||  ||||||| || |     
T  11224841 agtaacattctcttggacgaaaagttgaatcctaaaatatctgattttggtattgccagactacttcttgtcgatcaaactcaagttaatacaaataaaa 11224940  T
Q  275 ttgttggaacctagtaagtgttagattatg 304  Q
    | |||||||| |||||||| ||||| ||||    
T  11224941 tcgttggaacatagtaagtattagaatatg 11224970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 34218965 - 34219083
Alignment:
Q  106 attgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgatctcaaagcaagcaacattctcctagacgaagacatgaatg 205  Q
    |||||||||||| ||||||| |||||||| |||||| || |  | ||||| ||| | ||||||||  | ||||||||||| ||||||||| | |||| |     
T  34218965 attgctcgaggccttctttatcttcatgaagattctagattaaggattatccacagagatctcaagaccagcaacattcttctagacgaaaatatgattc 34219064  T
Q  206 ctaagatttcagattttgg 224  Q
    |||| || ||||| |||||    
T  34219065 ctaaaatatcagactttgg 34219083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 20084063 - 20083991
Alignment:
Q  152 ttatacaccgcgatctcaaagcaagcaacattctcctagacgaagacatgaatgctaagatttcagattttgg 224  Q
    |||||||||| ||||||||| | ||||| |||||  |||||||| | |||| | |||| ||||||||||||||    
T  20084063 ttatacaccgggatctcaaacctagcaatattctattagacgaaaatatgattactaaaatttcagattttgg 20083991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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