View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7677_low_12 (Length: 333)
Name: NF7677_low_12
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_low_12 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 24494623 - 24494310
Alignment:
| Q |
1 |
caaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttacagtgtaggctatgtcaggccttgtcatggataaatattgtaga |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24494623 |
caaggctgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttacagtgtaggctatgtcaggccttgtcatggaaaaatattgtaga |
24494524 |
T |
|
| Q |
101 |
gcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494523 |
gcccctatgacgcttctgtattccgtactatctgctacacttgcgccatcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttg |
24494424 |
T |
|
| Q |
201 |
catctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494423 |
catctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaa |
24494324 |
T |
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| Q |
301 |
gtgaatggaaccta |
314 |
Q |
| |
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|||||||||||||| |
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| T |
24494323 |
gtgaatggaaccta |
24494310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 93973 - 93660
Alignment:
| Q |
1 |
caaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttacagtgtaggctatgtcaggccttgtcatggataaatattgtaga |
100 |
Q |
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||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
93973 |
caaggttgtaaagtgtgtagatgatggatattgcatgaactgtgcaaacttatttacagtgtaggctatgtcaggccttgtcatggacaaatattgtaga |
93874 |
T |
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| Q |
101 |
gcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93873 |
gcccctatgacgcttctgtattccgtactatctgcttcacttgcgccatcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttg |
93774 |
T |
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| Q |
201 |
catctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93773 |
catctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaa |
93674 |
T |
|
| Q |
301 |
gtgaatggaaccta |
314 |
Q |
| |
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|||||||||||||| |
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| T |
93673 |
gtgaatggaaccta |
93660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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