View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7677_low_14 (Length: 326)
Name: NF7677_low_14
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 6141177 - 6140869
Alignment:
| Q |
1 |
agatgttttgcagaaattgtccctcatgtatcctaatgaactgagagaccttgttaaagttgataagaacattgaacatattgaattattactgaaaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6141177 |
agatgttttgcagaaattgtccctcatgtatcctaatgaactgagagaccttgttaaagttgataagaacattgaacatattgaattattactgaaaaca |
6141078 |
T |
|
| Q |
101 |
ataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6141077 |
ataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgct |
6140978 |
T |
|
| Q |
201 |
tcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6140977 |
tcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctga |
6140878 |
T |
|
| Q |
301 |
tgttcatgg |
309 |
Q |
| |
|
||||||||| |
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| T |
6140877 |
tgttcatgg |
6140869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 6179234 - 6178926
Alignment:
| Q |
1 |
agatgttttgcagaaattgtccctcatgtatcctaatgaactgagagaccttgttaaagttgataagaacattgaacatattgaattattactgaaaaca |
100 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| | ||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
6179234 |
agatgttttgcaaaagttgtccctcatgtatcctaatgaactcaaagaccttgttacagttgatgagaacagtgaagatattgaattattactgaaaaca |
6179135 |
T |
|
| Q |
101 |
ataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgct |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||| |
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| T |
6179134 |
ataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttgcccattatgacaatgtatgct |
6179035 |
T |
|
| Q |
201 |
tcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctga |
300 |
Q |
| |
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||||||||||| ||| ||||| ||||||||||| |||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||| |
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| T |
6179034 |
tcttggaaaaggtaagcgaagactcagaaaagttgggaccaatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctga |
6178935 |
T |
|
| Q |
301 |
tgttcatgg |
309 |
Q |
| |
|
||||||||| |
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|
| T |
6178934 |
tgttcatgg |
6178926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 6188024 - 6187719
Alignment:
| Q |
1 |
agatgttttgcagaaattgtccctcatgtatcctaatgaactgagagaccttgttaaagttgataagaacattgaacatattgaattattactgaaaaca |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| |
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|
| T |
6188024 |
agatgttttgcagaagttggccctcatgtaccctaatgaactgaaagatattgttaaagttgatgagaacagtgaacatattgaattattattgaaaaca |
6187925 |
T |
|
| Q |
101 |
ataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgct |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||||| |
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|
| T |
6187924 |
ataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgttttccaagaactttgcccattatgacaatgtatgct |
6187825 |
T |
|
| Q |
201 |
tcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctga |
300 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| |||| |||||||||| ||||| |||||||| ||||||||||||||| |||||||||| ||||| |
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|
| T |
6187824 |
tcttggaaaagataagcgaagactcggaaaagtttggaccaatatatgtttgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctga |
6187725 |
T |
|
| Q |
301 |
tgttca |
306 |
Q |
| |
|
|||||| |
|
|
| T |
6187724 |
tgttca |
6187719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 273
Target Start/End: Complemental strand, 6046540 - 6046372
Alignment:
| Q |
105 |
caagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttctt |
204 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||| ||| ||||| | | ||||| | | ||||| | |
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|
| T |
6046540 |
caagaattggaatttggggcatgggtggaatagggaagacaaccatagccagacagatgtttgcaaagcactttgcacaatatgaaagcgcttgctttat |
6046441 |
T |
|
| Q |
205 |
ggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagct |
273 |
Q |
| |
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|||||| ||| ||||||| ||||||||| |||| || || | ||||||||||||||||||||||| |
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|
| T |
6046440 |
ggaaaatgtaagtgaagaaatagaaaagtttggaccaaggtacatccgtaataagcttcttagtgagct |
6046372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 6062782 - 6062710
Alignment:
| Q |
106 |
aagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaacttt |
178 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||| ||||| |
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| T |
6062782 |
aagaattggaatttggggcatgggaggaataggaaagacaaccatagccagacagatgtttgccaagcacttt |
6062710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 276
Target Start/End: Complemental strand, 6087960 - 6087790
Alignment:
| Q |
106 |
aagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttg |
205 |
Q |
| |
|
|||| ||||||| ||||||||| | ||||| ||||||||||||||||| | ||| |||||||||||| ||||| | | ||||| | | ||||| ||| |
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|
| T |
6087960 |
aagaattggaatatggggcatgggaggaatcggaaagacaaccatagccagacaaatgtttgccaagcactttgcagaatatgacagcgcttgctttttg |
6087861 |
T |
|
| Q |
206 |
gaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctact |
276 |
Q |
| |
|
||||| ||| |||||| || ||| |||||| |||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
6087860 |
gaaaatgtaagtgaagatgtagtaaaactcggactaatacatgttcgtaataaccttcttggtgagctact |
6087790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 6123760 - 6123822
Alignment:
| Q |
104 |
ccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgttt |
166 |
Q |
| |
|
|||||| ||||||||||||| ||| |||| ||||||| ||||||||||||| ||| |||||| |
|
|
| T |
6123760 |
ccaagaattggaatttggggtatggatggattaggaaaaacaaccatagcaagacaaatgttt |
6123822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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