View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7677_low_16 (Length: 250)
Name: NF7677_low_16
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 33559131 - 33559361
Alignment:
| Q |
1 |
ttcttaagtgaaaggttgaaagtttatgatattcacaaacccaaattcgatgaacacaaggatcttgaaagcttatgatgttcacaaacctgaattcgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
33559131 |
ttcttaagtgaaaggttgaaagtttatgacattcacaaacccaaattcgatgaacacaaggattttgaaagtttatgatgttcacaaacccgaattcgat |
33559230 |
T |
|
| Q |
101 |
gaagaagccaatgtagaaaatacatacaaattggtttctctcccgttctacccttacttactcacacataaagatggaatgtaaagtgatgaagtcttat |
200 |
Q |
| |
|
|||||||||| |||| |||| ||| ||||||||||||| |||||||| | ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33559231 |
gaagaagccattgtacaaaacacacacaaattggtttcactcccgttatgcccttacagacccacacataaagatggaatgtaaagtgatgaagtcttat |
33559330 |
T |
|
| Q |
201 |
ggacggtgtgaggaccaatttaaagatggtg |
231 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |
|
|
| T |
33559331 |
ggacagtgtgaggtccaatttaaagatggtg |
33559361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University