View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7677_low_2 (Length: 660)

Name: NF7677_low_2
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7677_low_2
NF7677_low_2
[»] chr8 (3 HSPs)
chr8 (1-643)||(8165916-8166533)
chr8 (212-265)||(40941109-40941162)
chr8 (1-82)||(17794057-17794138)
[»] chr3 (3 HSPs)
chr3 (210-310)||(30857275-30857375)
chr3 (212-285)||(50708126-50708200)
chr3 (429-498)||(3693733-3693800)
[»] chr7 (3 HSPs)
chr7 (222-277)||(43520305-43520360)
chr7 (429-480)||(9649892-9649942)
chr7 (429-480)||(23866834-23866885)
[»] chr4 (3 HSPs)
chr4 (208-327)||(1150478-1150597)
chr4 (429-480)||(13520917-13520967)
chr4 (1-80)||(32668634-32668713)
[»] chr5 (1 HSPs)
chr5 (4-56)||(16639034-16639086)
[»] chr1 (4 HSPs)
chr1 (221-305)||(19727229-19727313)
chr1 (195-254)||(39036748-39036806)
chr1 (221-286)||(19725071-19725136)
chr1 (30-82)||(12260601-12260653)
[»] chr2 (2 HSPs)
chr2 (43-82)||(41973366-41973405)
chr2 (432-480)||(30659272-30659319)
[»] scaffold0863 (1 HSPs)
scaffold0863 (208-288)||(118-198)


Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Original strand, 8165916 - 8166533
Alignment:
Q  1 aagtggctcgaaaatgcattaagcagaaaaagggagaaaatagaaagaattctcaataacttaatagaattctttgatgtgtgaaataatttacacgaat 100  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8165916 aagtggctcgaaaatgcatcaagcagaaagagggagaaaagagaaagaattctcaataacttaatagaattctttgatgtgtgaaataatttacacaaat 8166015  T
Q  101 tctgttcaaagagagaattaacaactcatccatgagaaacttgggcgacaaggaacatgtgtgttagatcaagtacaaaaaacttcagtttatatactaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8166016 tctgttcaaagagagaattaacaactcatccatgagaaacttgggcgacaaggaacatgtgtgttagatcaagtacaaaaaacttcattttatatactaa 8166115  T
Q  201 aatatttttagattgaatatcaaaatatttcagattaagtatcaaaatattttagattgagtactaaaataattcagcgaaacttgagaattaagacaac 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8166116 aatatttttagattgaatatcaaaatattttagattaagtatcaaaatattttagattgagtactaaaataattcagcgaaacttgagaattaagacaac 8166215  T
Q  301 actttcagataataataaagttaattaatttgacattttcgttgattgctcactccgttcacaaaattgattatctaaagggcacaatctttgagctaca 400  Q
    |||||| ||||||                     ||||||||||||||||||  |||||||||||||||||||||  |||||||||| |||||| |||||    
T  8166216 actttcggataat---------------------attttcgttgattgctca--ccgttcacaaaattgattatccgaagggcacaacctttgaactaca 8166292  T
Q  401 tcctccactacaatgtgtctgattcaacgtggaacttccactttttatcaattcacacgacattagttctatccaacatgaaagtaggtgtttagtcttc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8166293 tcctccactacaatgtgtctgattcaacgtggaacttccactttttatcaattcacacgacattacttctatccaacatgaaagtaggtgtttagtcttc 8166392  T
Q  501 caatttactctagaactagaatgaagcaccatgataagaannnnnnngtctgttccatgataagattttgatatatcctcaatcaactattgatgtcaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8166393 caatttactctagaactagaatgaagcaccatgataagaatttttttgtctgttccatgataagattttg--atatcctcaatcaactattgatgtcaat 8166490  T
Q  601 ttgaattatatttgcgcaaccaacttactcatacacattactt 643  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  8166491 ttgaattatatttgcgcaaccaacttagtcatacacgttactt 8166533  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 40941109 - 40941162
Alignment:
Q  212 attgaatatcaaaatatttcagattaagtatcaaaatattttagattgagtact 265  Q
    ||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||    
T  40941109 attgaatgtcaaaatatttcaaattgagtaccaaaatattttagattgagtact 40941162  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 17794057 - 17794138
Alignment:
Q  1 aagtggctcgaaaatgcattaagcagaaaaagggagaaaatagaaagaattctcaataacttaatagaattctttgatgtgt 82  Q
    ||||||||||||||| |||  |||| ||| || ||||| | ||||||| ||||| |||||| |||| ||||||||| |||||    
T  17794057 aagtggctcgaaaattcatcgagcataaagagcgagaagagagaaagagttctcgataactcaataaaattctttggtgtgt 17794138  T

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Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 30857275 - 30857375
Alignment:
Q  210 agattgaatatcaaaatatttcagattaagtatcaaaatattttagattgagtactaaaataattcagcgaaacttgagaattaagacaacactttcaga 309  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||||||| || |||||||| || ||| ||| ||||| ||||||| | ||||||||||    
T  30857275 agattgagtattaaaaaatttcagattaagtatcaaaatattttagattgtgttctaaaatattttagcaaaatttgaggattaagaaatcactttcaga 30857374  T
Q  310 t 310  Q
    |    
T  30857375 t 30857375  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 50708200 - 50708126
Alignment:
Q  212 attgaatatcaaaatatttcagattaagtatcaaaa-tattttagattgagtactaaaataattcagcgaaactt 285  Q
    ||||||||||||||||||  |||||  ||| ||||| ||||||||||||||| |||||||| |||||| ||||||    
T  50708200 attgaatatcaaaatattctagattgtgtaccaaaaatattttagattgagtgctaaaatatttcagcaaaactt 50708126  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 3693733 - 3693800
Alignment:
Q  429 gtggaacttccactttttatcaattcacacgacattagttctatccaacatgaaagtaggtgtttagtct 498  Q
    |||| |||||||||||||  |||||||||| |||||||||||| ||||||||| | |  |||||||||||    
T  3693733 gtgggacttccacttttt--caattcacacaacattagttctacccaacatgagaatttgtgtttagtct 3693800  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 43520360 - 43520305
Alignment:
Q  222 aaaatatttcagattaagtatcaaaatattttagattgagtactaaaataattcag 277  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  43520360 aaaatatttcaaatcaagtatcaaaatattttagattgagtactaaaatatttcag 43520305  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 9649942 - 9649892
Alignment:
Q  429 gtggaacttccactttttatcaattcacacgacattagttctatccaacatg 480  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| ||||||||    
T  9649942 gtggaacttccacttttt-tcaattcacacaacactagttctacccaacatg 9649892  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 23866834 - 23866885
Alignment:
Q  429 gtggaacttccactttttatcaattcacacgacattagttctatccaacatg 480  Q
    |||| ||||||||||||| ||||||||||| ||| |||||||| ||||||||    
T  23866834 gtgggacttccactttttttcaattcacacaacactagttctacccaacatg 23866885  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 327
Target Start/End: Complemental strand, 1150597 - 1150478
Alignment:
Q  208 ttagattgaatatcaaaatatttcagattaagtatcaaaatattttagattgagtactaaaataattcagcgaaacttgagaattaagacaacactttca 307  Q
    |||||||  ||| ||||||||||||||||| | |||||||||||| | ||   || | |||||| || ||| ||||||| ||||||||| |||||||||     
T  1150597 ttagatttcataccaaaatatttcagattatgcatcaaaatatttcaaataacgttccaaaatattttagcaaaacttgggaattaagaaaacactttct 1150498  T
Q  308 gataataataaagttaatta 327  Q
     |||||| |||| |||||||    
T  1150497 aataatagtaaaattaatta 1150478  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 13520967 - 13520917
Alignment:
Q  429 gtggaacttccactttttatcaattcacacgacattagttctatccaacatg 480  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| ||||||||    
T  13520967 gtggaacttccacttttt-tcaattcacacaacactagttctacccaacatg 13520917  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 32668713 - 32668634
Alignment:
Q  1 aagtggctcgaaaatgcattaagcagaaaaagggagaaaatagaaagaattctcaataacttaatagaattctttgatgt 80  Q
    |||||||||| ||||||||  |||| ||| ||| |||| | | ||||| |||||||||||| ||||||| ||||||||||    
T  32668713 aagtggctcggaaatgcatcgagcaaaaagaggaagaagagataaagagttctcaataactcaatagaactctttgatgt 32668634  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 16639086 - 16639034
Alignment:
Q  4 tggctcgaaaatgcattaagcagaaaaagggagaaaatagaaagaattctcaa 56  Q
    |||||||||||||||| ||||| |||||||||||| | ||||||| |||||||    
T  16639086 tggctcgaaaatgcatcaagcataaaaagggagaagagagaaagagttctcaa 16639034  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 19727229 - 19727313
Alignment:
Q  221 caaaatatttcagattaagtatcaaaatattttagattgagtactaaaataattcagcgaaacttgagaattaagacaacacttt 305  Q
    ||||||||||||||||  || |||||||||||||||||  || |||||||| || ||| ||||||| |||  |||| ||||||||    
T  19727229 caaaatatttcagattgtgtttcaaaatattttagattacgttctaaaatattttagcaaaacttgggaaaaaagaaaacacttt 19727313  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 39036806 - 39036748
Alignment:
Q  195 tactaaaatatttttagattgaatatcaaaatatttcagattaagtatcaaaatatttta 254  Q
    ||||||||||| || |||||| ||| ||||||||||||||||||||  ||||||||||||    
T  39036806 tactaaaatatatt-agattgcataccaaaatatttcagattaagttccaaaatatttta 39036748  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 19725136 - 19725071
Alignment:
Q  221 caaaatatttcagattaagtatcaaaatattttagattgagtactaaaataattcagcgaaacttg 286  Q
    |||||||||||||||| ||| ||||| |||| ||||||| || |||||||| || ||| |||||||    
T  19725136 caaaatatttcagattgagtttcaaattattctagattgcgttctaaaatattttagcaaaacttg 19725071  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 12260601 - 12260653
Alignment:
Q  30 aagggagaaaatagaaagaattctcaataacttaatagaattctttgatgtgt 82  Q
    ||||||||| | ||||||| ||||||| |||| |||||||||||||| |||||    
T  12260601 aagggagaagagagaaagagttctcaacaactcaatagaattctttggtgtgt 12260653  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 41973366 - 41973405
Alignment:
Q  43 gaaagaattctcaataacttaatagaattctttgatgtgt 82  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  41973366 gaaagaattctcgataactcaatagaattctttgatgtgt 41973405  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 30659272 - 30659319
Alignment:
Q  432 gaacttccactttttatcaattcacacgacattagttctatccaacatg 480  Q
    ||||||||||||||| ||||||||||| ||| |||||||| ||||||||    
T  30659272 gaacttccacttttt-tcaattcacacaacactagttctacccaacatg 30659319  T

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Target: scaffold0863 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 118 - 198
Alignment:
Q  208 ttagattgaatatcaaaatatttcagattaagtatcaaaatattttagattgagtactaaaataattcagcgaaacttgag 288  Q
    ||||||||  || |||||||||| |||||  ||  ||||||||| ||||||| || ||||||||||| ||| |||||||||    
T  118 ttagattgcctaccaaaatattttagattgtgttccaaaatattctagattgcgttctaaaataatttagcaaaacttgag 198  T

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