View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7677_low_8 (Length: 377)
Name: NF7677_low_8
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 9126260 - 9126601
Alignment:
| Q |
19 |
attaaacctctgtgttctttgtttaatctaaatgccatttgatgaattgcattgtttttggtaaagatacttggttttgcgacaaatgatagtgtgcctt |
118 |
Q |
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| T |
9126260 |
attaaacctctgtgttctttgtttaatctaaatgccatttgatgaattgcattgtttttggtaaagatacttggttttgctacaaatgatagtgtgcctt |
9126359 |
T |
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| Q |
119 |
gcttgtttcttactctttgtcttctctctaaagttggaaaattaaagttgattacaaaaggttttttatgctatatagtttgttggatgttatcagcact |
218 |
Q |
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| T |
9126360 |
gcttgtttcttactctttgtcttctctctaaagttggaaaa-----gttgattacaaaaggtttattatgctatatagtttgttggatgttatcagcact |
9126454 |
T |
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| Q |
219 |
ttgttacaattttcatgtcatttgtttcatttagacgcagaaggttcttagagcgctcaggttttcaaaaaagggctgctgcaactctttatgaaatgtt |
318 |
Q |
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| T |
9126455 |
ttgttacaattttcatgtcatttgtttcattcagacgcagaaggttcttagagcgctcagattttcaaaaaagggctgctgcaactctttatgaaatgtt |
9126554 |
T |
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| Q |
319 |
ttcgtcgttttcacatttttggtgctatgttccctgctattcatctc |
365 |
Q |
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| T |
9126555 |
ttcgtcgttttcacatttttggtgctatgttccctgctattcatctc |
9126601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 9162384 - 9162474
Alignment:
| Q |
185 |
tatgctatatagtttgttggatgtt--atcagcactttgttacaattttcatgtcatttgtttcatttagacgcagaaggttcttagagcg |
273 |
Q |
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| T |
9162384 |
tatgctatatagtttgctgggtgttctatcagcacttaatttcaatttttatatcatttgtttcattcaggcgcagaaggttcttagagcg |
9162474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 3355675 - 3355637
Alignment:
| Q |
317 |
ttttcgtcgttttcacatttttggtgctatgttccctgc |
355 |
Q |
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| T |
3355675 |
tttttgtcgttttcacatttttggtactatgttccctgc |
3355637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 41620230 - 41620274
Alignment:
| Q |
116 |
cttgcttgtttcttactc-tttgtcttctctctaaagttggaaaa |
159 |
Q |
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| T |
41620230 |
cttgcttgtttcttactcctttgtcttctcttgaaagttggaaaa |
41620274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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