View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7677_low_9 (Length: 375)
Name: NF7677_low_9
Description: NF7677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7677_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 4257571 - 4257228
Alignment:
| Q |
17 |
gaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacgcatgacttcaaataatgtggcaagtcatcataactcatgcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257571 |
gaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacacatgacttcaaataatgtggcaagtcatcataactcatgcc |
4257472 |
T |
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| Q |
117 |
taaaattcttgttatattagctaaatgtggattatggtctaactccgaacttagattttggcatagttttttccactcagaaacagttttatctttagtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257471 |
taaaattcttgttatattagctaaatgtggattacggtctaactccgaacttagattttggcatagttttttccactcagaaacagttttatctttagtt |
4257372 |
T |
|
| Q |
217 |
gacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttcctcagacatatcttcgagctctggtggacaatttccac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4257371 |
gacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttccttagacatatcttcgagctctggtggacaatttccac |
4257272 |
T |
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| Q |
317 |
tgaaaccaaatcgaaacgccttgttacaaatgagttcccatgat |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257271 |
tgaaaccaaatcgaaacgccttgttacaaatgagttcccatgat |
4257228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 3310081 - 3310171
Alignment:
| Q |
188 |
tccactcagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttc |
278 |
Q |
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| T |
3310081 |
tccactcagacatggttttagcttttgttgacaaaagacctccaatggccacaattgccagtggtagtcctccacatttttgaacaatttc |
3310171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 3220915 - 3221018
Alignment:
| Q |
184 |
tttttccactcagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttcctcag |
283 |
Q |
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|||| ||||||| ||| |||||| ||| ||||| || ||||| || || ||||||||||| || ||||| || |||||||||||||||||||||| | |
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| T |
3220915 |
ttttcccactcaaaaatggttttagattttgttgataaaagaccaccaatggccacaattgccagtggtaatcctccacatttttgaacaatttcctcgg |
3221014 |
T |
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| Q |
284 |
acat |
287 |
Q |
| |
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|||| |
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| T |
3221015 |
acat |
3221018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 3321694 - 3321770
Alignment:
| Q |
202 |
gttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttc |
278 |
Q |
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||||||||||| |||||||| |||||||| || ||||||||||| || |||| | ||||||||| ||||||||| |
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| T |
3321694 |
gttttatcttttgttgacaaaagacctccaatggccacaattgccagtggtagttctccacattttttaacaatttc |
3321770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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