View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7678_low_1 (Length: 409)
Name: NF7678_low_1
Description: NF7678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7678_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 48221877 - 48222256
Alignment:
| Q |
16 |
agtacataaagaagccacaaaagatattaacatttagctatcacaaataaatgtcacacataaatggaacaagatcaatgttgaattaagtgaaataaaa |
115 |
Q |
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| T |
48221877 |
agtacataaagaagccacaaaagatattaacatttagctatcacaaaaaaatgtcacacataaatggaacaagatcaatgttgaattaagtgaaataaaa |
48221976 |
T |
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| Q |
116 |
--ctttattaacttgactcaacagtccaaactcattacaacgacttgcatttattcatggatacaatacaaattaaccaaagtaaagaaaatctcaaaca |
213 |
Q |
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| T |
48221977 |
aactttattaacttgactcaacagtccaaactcattacaacgacttgcatttatttatggatacaatacaaattaaccaaagtaaagaaaatctcaaaca |
48222076 |
T |
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| Q |
214 |
gatgccttaatgtccctagagtatccattttgcttatcagcaaacctatcccaaagcatcacacctccatactttcttgatcttttaacaaaaggcaaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48222077 |
gatgccttaatgtccctagagtatccattttgcttatcagcaaacctatcccaaagcatcacacctccatactttcttgatcttttaacaaaaggcaaca |
48222176 |
T |
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| Q |
314 |
ctttacttataagtacctgtgttggcacataaccactactagcagtagcagctgatggtgaggcaggaactccaacataa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48222177 |
ctttacttataagtacctgtgttggcacataaccactactagcagtagcagctgatggtgaggcaggaactccaacataa |
48222256 |
T |
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