View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7678_low_2 (Length: 326)
Name: NF7678_low_2
Description: NF7678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7678_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 323
Target Start/End: Original strand, 52993624 - 52993941
Alignment:
| Q |
6 |
gatctctaaactttatttttatatgagggtaaaccacgtttcgcctatatgacagagggtaaaagcctattaatccaaatataaattatagaaaatatta |
105 |
Q |
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| T |
52993624 |
gatctctaaactttatttttacatgatggtaaaccacatttcgtctatatgacagggggtaaaagcctattaacctaaatataaattatagaaaatatta |
52993723 |
T |
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| Q |
106 |
ttttgagaagcaaattatagtatacgagtataataattaatcttcttctttacttgtataatacaggatgcgagaatggaaataaaacgtggttccacat |
205 |
Q |
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| T |
52993724 |
ttttgacaagcaaattatagtatacgagtataataattaatcttcttctttacttgtataatacaggatgcgagaatggaaataaaacgtggttccacat |
52993823 |
T |
|
| Q |
206 |
cactttctcatgcattatttcatcaatctctatctttcgtccagcaagtgataaagataaaggaaggagtatttccattctaagtctaacgtgaacatct |
305 |
Q |
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| T |
52993824 |
cactttctcatgcattatttcatcaatctctatctttcgtccagcaagtgataaagataaaggaaggagtatttccattctaagtctaacgtgaacatct |
52993923 |
T |
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| Q |
306 |
atttaataacacgatagt |
323 |
Q |
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| T |
52993924 |
atttaataacacgatagt |
52993941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 29296105 - 29296152
Alignment:
| Q |
31 |
agggtaaaccacgtttcgcctatatgacagagggtaaaagcctattaa |
78 |
Q |
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| T |
29296105 |
agggtaaaccaaatttcgcctgtatgacagagggtaaaagcctattaa |
29296152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 29295971 - 29296017
Alignment:
| Q |
32 |
gggtaaaccacgtttcgcctatatgacagagggtaaaagcctattaa |
78 |
Q |
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| T |
29295971 |
gggtaaaccaaatttcgcctatatgacagagggtaaaagcatattaa |
29296017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 11494450 - 11494500
Alignment:
| Q |
32 |
gggtaaaccacgtttcgcctatatgacagagggtaaaagcctattaatcca |
82 |
Q |
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| T |
11494450 |
gggtaaaccaaatttcgcctatatggcagggggtaaaagcctattaatcca |
11494500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 11494350 - 11494304
Alignment:
| Q |
32 |
gggtaaaccacgtttcgcctatatgacagagggtaaaagcctattaa |
78 |
Q |
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| T |
11494350 |
gggtaaaccatatttcgtctatatgacagggggtaaaagcctattaa |
11494304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 28929572 - 28929606
Alignment:
| Q |
44 |
tttcgcctatatgacagagggtaaaagcctattaa |
78 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
28929572 |
tttcgcctttatgacagagggtaaaagcctattaa |
28929606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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