View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7679_low_2 (Length: 268)
Name: NF7679_low_2
Description: NF7679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7679_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 34986455 - 34986703
Alignment:
| Q |
1 |
gcttccactttgtagtatttctctgctgcaggttttaatctatgatcctagctctttaactatgagttacacatagtttttgtccttgtaaaatcagcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986455 |
gcttccactttgtagtatttctctgctgcgggttttaatctatgatcctagctctttaactatgagttacacatagtttttgtccttgtaaaatcagcat |
34986554 |
T |
|
| Q |
101 |
gagatttaagtctctgctgaaggttttaatctatgattttgttttattgtactaatgagttgacggtatcattttcgtatcaatgctttgtttgtactat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34986555 |
gagatttaagtctctgctgaaggttttaatctatgattttgttttattgtactagtgagttgacggtatcattttcgtatcaatgc----tttgtactat |
34986650 |
T |
|
| Q |
201 |
gctacacttttacaggtttagacacaaccagaatttgcattatatatttctat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986651 |
gctacacttttacaggtttagacacaaccagaatttgcattatatatttctat |
34986703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 34986382 - 34986434
Alignment:
| Q |
57 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagatttaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34986382 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
34986434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 34993200 - 34993250
Alignment:
| Q |
59 |
actatgagttacacatagtttttgtccttgtaaaatcagcatgagatttaa |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34993200 |
actatgagttgcacatagtttttgtccttgtaaaatcagcatgagttttaa |
34993250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 34978170 - 34978229
Alignment:
| Q |
156 |
tgagttgacggtatcattttcgtatcaatgctttgtttgtactatgctacacttttacaggttt |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
34978170 |
tgagttgacggcatcattttcgtatcaatgc----tttgtactataccacacttttacaggttt |
34978229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University