View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7679_low_3 (Length: 320)
Name: NF7679_low_3
Description: NF7679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7679_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 22061830 - 22061533
Alignment:
| Q |
20 |
agaatagtaatcagtgacatctaagggatgatgattttgtcaaagatgttagcaccattttggatataattaa----tagggttcgccgacaatccaaca |
115 |
Q |
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| T |
22061830 |
agaatagtaatcagttacatctaagggatgatcattttgtcaaagatgttaacaccattttggatataattaacgaatagggttcgccgacaatccaaca |
22061731 |
T |
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| Q |
116 |
ccgaaatccatcgccggcgagtgaacctttggtattatcgtcagaaacaattggccggatttaggtgttgaagcgaagaaggaaggattatcggagtgga |
215 |
Q |
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| T |
22061730 |
ccgaaatccatcgccggcgagtgaacctttggtattatcgtcagaaacaattggccggatttaggtgttggagcgaagaaggaaggaatatcggagtgga |
22061631 |
T |
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| Q |
216 |
ggagtaacaggagcatgaattggaggttttgctgataaactgatcagagatggagatcgctggtgaagattgtatttctggggatgatgatgatgtcc |
313 |
Q |
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| T |
22061630 |
ggagtaacaggagcatgaattggaggttttgctgataaactgatcagagatggagatcgctggtgaagattgtatttccggggatgatgatgatgtcc |
22061533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 32904267 - 32904337
Alignment:
| Q |
20 |
agaatagtaatcagtgacatctaagggatgatgattttgtcaaagatgttagcaccattttggatataatt |
90 |
Q |
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||||||||| ||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
32904267 |
agaatagtagtcagttacatttaagggatgatggttttgtcaaagatgttaagaccattttggatataatt |
32904337 |
T |
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