View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7680_high_11 (Length: 513)
Name: NF7680_high_11
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 507
Target Start/End: Complemental strand, 52409689 - 52409214
Alignment:
| Q |
20 |
tgcctatccctcgcccccaaaaagttatgtactataacctttacttaggaggtgcatgatattaattgttatagtttaatctcctgtgatatgatgatga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52409689 |
tgcctatccctcgcccccaaaaagttatg------------tacttaggaggtgcatgatattaattgttatagtttaatctcctgtgatatgatgatga |
52409602 |
T |
|
| Q |
120 |
gagaaagaactctaattccaacatttgtcttttgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaaagccgaccttga |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52409601 |
gagaaagaactctaattccaacatttgtcttctgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaaagccgaccttga |
52409502 |
T |
|
| Q |
220 |
attaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatagttaatttgcaccttaattaggcttgtgtacaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52409501 |
attaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatatttaatttgcaccttaattaggcttgtgtacaat |
52409402 |
T |
|
| Q |
320 |
taatctttatgtccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataagaacagcaccact |
419 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52409401 |
taatctttatttccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataagaacagcaccact |
52409302 |
T |
|
| Q |
420 |
gccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccattgccaacttcatctcactcg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52409301 |
gccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccattgccaacttcatcacactcg |
52409214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University