View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_high_18 (Length: 377)
Name: NF7680_high_18
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_18 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 91 - 356
Target Start/End: Complemental strand, 9546232 - 9545967
Alignment:
| Q |
91 |
gtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcacaagaaaaataaacaagttg |
190 |
Q |
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| T |
9546232 |
gtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcacaagaaaaataaacaagttg |
9546133 |
T |
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| Q |
191 |
cagaaagtggtggtgattattcaatttcacaacaacatgaaaaaattaacattgnnnnnnntatcaatgttactgaaaagaaaattcatgaatgtccaat |
290 |
Q |
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| T |
9546132 |
cagaaagtggtggtgattattcaatttcacaacatcatgaaaaaattaacattgaaaaaaatatcaatgttagtgaaaagaaaattcatgaatgtccaat |
9546033 |
T |
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| Q |
291 |
ttgttttagagaattttcttcaggtcaagcactaggtggacataggagaacacataatattggatt |
356 |
Q |
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| T |
9546032 |
ttgttttagagaatttgcttcaggtcaagcactaggtggacataggagaacacataatattggatt |
9545967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 19675 - 19594
Alignment:
| Q |
264 |
tgaaaagaaaattcatgaatgtccaatttgttttagagaattttcttcaggtcaagcactaggtggacataggagaacacat |
345 |
Q |
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| T |
19675 |
tgaaaagaaagttcatgaatgtccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacat |
19594 |
T |
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