View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_high_19 (Length: 359)
Name: NF7680_high_19
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 41675010 - 41675339
Alignment:
| Q |
14 |
atatactagcaaacattgatgatctctttgaatactcacacactctcactaacttctcttctctcttattatcacagtacccnnnnnnnccctacacaca |
113 |
Q |
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| T |
41675010 |
atatactagcaaacattgatgatctctttgaatactcacacactctcactaacttctcttctctcttattatcacagtaccctttttttccctacacaca |
41675109 |
T |
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| Q |
114 |
aataaagaatcagttgcatagtgtgaaagctagctagttttggatattactatacaatttcttatggatgagaagagaaagacaagttccaagtcattgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675110 |
aataaagaatcagttgcatagtgtgaaagctagctagttttggatattactatacaatttcttatggatgagaagagaaagacaagttccaagtcattgt |
41675209 |
T |
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| Q |
214 |
tctcaaggagttcctcaacaagaagctcaacttcaaactcttcactcctaaggagttcttcttcttcctccaaatgcaatcttcaaagaagcttctcaca |
313 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675210 |
tctcaaggagttcctcaacaagaagctctacttcaaactcttcactcctaaggagttcttcttcttcctccaaatgcaatcttcaaagaagcttctcaca |
41675309 |
T |
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| Q |
314 |
gaaaaacccttcttcaataggtcgaaaatg |
343 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41675310 |
gaaaaacccttcttcaataggtcgaaaatg |
41675339 |
T |
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