View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7680_high_20 (Length: 351)
Name: NF7680_high_20
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 33707688 - 33707365
Alignment:
| Q |
11 |
cagagactcaagattacttcggcgtctgttctcatcnnnnnnnaaacttgatgcagactgaaacataaggaaacagttagctgtgacattcattagatat |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33707688 |
cagagattcaagattacttcggcgtctgttctcatctttttttaaacttgatgcagactgaaacataaggaaacagttagctgtgacattcattagatat |
33707589 |
T |
|
| Q |
111 |
agaacaatcttctgcataattagtatgtaaaaagctctctaatctcattgaagatccatcaataagaacacaatgcttataatacctcatcacaaaaatt |
210 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33707588 |
agaacaatcttctgcataagtaatatgtaaaaagctctctaatctcattgaagatccatcaataagaacacaatgcttataatacctcatcacaaaaatt |
33707489 |
T |
|
| Q |
211 |
atctaacttttatggcatgttacctctatctgtatttttatctacatgtaagaaaatttagtcttaattcttaaatgtacacaaaaccttgagacttctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33707488 |
atctaacttttatggcatgttacctctatctgtatttttatctacatgtaagaaaatttagtcttaattcttaaatgtacacaaaaccttgagacttctt |
33707389 |
T |
|
| Q |
311 |
tagatctatttagcaggcagcaaa |
334 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33707388 |
tagatctatttagcaggcagcaaa |
33707365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University