View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_high_24 (Length: 316)
Name: NF7680_high_24
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 5288764 - 5288475
Alignment:
| Q |
13 |
tcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttgtcaaggaaaatgtttccattcatttagtatttgttctttttatt |
112 |
Q |
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| T |
5288764 |
tcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttgtcagggaaaatgtttccattcatttagtatttgttctttttatt |
5288665 |
T |
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| Q |
113 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
212 |
Q |
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| T |
5288664 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
5288565 |
T |
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| Q |
213 |
tactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgat |
302 |
Q |
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| T |
5288564 |
tactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttacgattaattaactgtgttatgctatatttttaggtttgat |
5288475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 113 - 302
Target Start/End: Original strand, 8034753 - 8034938
Alignment:
| Q |
113 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
212 |
Q |
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| T |
8034753 |
agaagtttggtgtgatcatctatctatttgttgttcttctcc----caattcctgttggaccaaacctttaattaaccgtctcgttaccatcgttcccga |
8034848 |
T |
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| Q |
213 |
tactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgat |
302 |
Q |
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| T |
8034849 |
tgctctcaagtattcaacactcgttgatcacaaccaccattatcaatttacaattaattaactgtgttatgctatgttcttaggtttgat |
8034938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 51380273 - 51380160
Alignment:
| Q |
169 |
tggaccaaaccttcaattaaccgtctcgttatcatcgttctcgatactctcatgtactcaacact----cgtcgatcgca---accaccattaccaattt |
261 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| |||||| |||| |||||||||||| |
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| T |
51380273 |
tggaccaaacctgcaattaaccgtctcgttatcatcgttctcgatgctcttaggtactcaacactcgtccgtccatcgcaactaccagcattaccaattt |
51380174 |
T |
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| Q |
262 |
accattaattaact |
275 |
Q |
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| T |
51380173 |
tccattaattaact |
51380160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 42965997 - 42966069
Alignment:
| Q |
40 |
aagtgttccatgtcattcattatattttgtcaaggaaaatgtttccattcatttagtatttgttctttttatt |
112 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||| ||||||| |||||||||| ||||||||| |
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| T |
42965997 |
aagtgttccatgtcatttattatattttgtcaagaaaaatattttcattcatctagtatttgtcctttttatt |
42966069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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