View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_high_29 (Length: 270)
Name: NF7680_high_29
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33865039 - 33864784
Alignment:
| Q |
1 |
atgtttaaaactttaaattaaattacccatgtgtagtttttcc-aactagtattcctggatccgccattggaatatagttgatagtaacaatttttgaaa |
99 |
Q |
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| T |
33865039 |
atgtttaaaactttaaattaaattacccatgtgtagtttttcctaactagtattcctgaatccgccattggaatatagttgatagtaacaatttttgaaa |
33864940 |
T |
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| Q |
100 |
atctatataagtatattatattagatggaatatacaagnnnnnnntgaataattaaaatgaggcagtaaactactctatgtttttcaaaagataaacttt |
199 |
Q |
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| T |
33864939 |
atctatataagtatattatattagatggaatatacaagagaaaaatgaataattaaaatgaggcagtaaactactctatgttttccaaaagataaacttt |
33864840 |
T |
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| Q |
200 |
ataaatctataaactttacaatatataagatatttacgtattggatattgggggtg |
255 |
Q |
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| T |
33864839 |
ataaatctataaactttacaatatataagatatttacgtattggacattgggggtg |
33864784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33853564 - 33853522
Alignment:
| Q |
1 |
atgtttaaaactttaaattaaattacccatgtgtagtttttcc |
43 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
33853564 |
atgtttaaaactttaaattaaatgacccatatgtagtttttcc |
33853522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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