View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7680_high_36 (Length: 242)
Name: NF7680_high_36
Description: NF7680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7680_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 1495309 - 1495511
Alignment:
| Q |
25 |
acaacaatctatttcttccattataactagaagtaaatcaatggcttcaaaattttatttacctgaacattgttgggaacatatcttaagattgctcgga |
124 |
Q |
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| T |
1495309 |
acaacaatctatttcttccattataactagaagtaaatcaaaggctgcaaaattttatttacctgaacattgttgggaacatatcttaagattgctcgga |
1495408 |
T |
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| Q |
125 |
gacaacccacttagagatgatgaggaagacccctacaaatatgtctccctcgtttgcaaacaattcttgtccatcaccaaccgtctccgatgctatcttt |
224 |
Q |
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| T |
1495409 |
gacaacccacttagagacgatgaggaagacccctacaaatatgtctccctcgtttgcaaacaattcttgtccatcaccaaccgtctccgatgctatcttt |
1495508 |
T |
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| Q |
225 |
ctg |
227 |
Q |
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||| |
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| T |
1495509 |
ctg |
1495511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 1516874 - 1517077
Alignment:
| Q |
4 |
tttcaattcttcacaacaacaacaacaatctatttcttccattataactagaagtaaatcaatggcttcaaaattttatttacctgaacattgttgggaa |
103 |
Q |
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| T |
1516874 |
tttcaattcttcataacaacaacaacaatcgatttcttccattataactagaagtaaatcaatggctgcaaaattttatttacctgaagattgttgggaa |
1516973 |
T |
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| Q |
104 |
catatcttaagattgctcggagacaacccacttagagatgatgaggaagacccctacaaatatgtctccctcgtttgcaaacaattcttgtccatcacca |
203 |
Q |
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| T |
1516974 |
catgtcttcagtttgctcggagacaa---------aaccgatgaggatgacccctacaaatatgtctccctcgtttccaaacaattcttgtccatcacca |
1517064 |
T |
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| Q |
204 |
accgtctccgatg |
216 |
Q |
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| T |
1517065 |
accgtctccgatg |
1517077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 1533377 - 1533576
Alignment:
| Q |
19 |
acaacaacaacaatctatttcttccattataactagaagtaaatcaatggcttcaaaattttatttacctgaacattgttgggaacatatcttaagattg |
118 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
1533377 |
acaacaacaacaatcgatttcttccattataagtagaagtaaatcaatggctgcaaaattttatttacctgaagattgttgggaacatgtcttaagattg |
1533476 |
T |
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| Q |
119 |
ctcggagacaacccacttagagatgatgaggaagacccctacaaatatgtctccctcgtttgcaaacaattcttgtccatcaccaaccgtctccgatgct |
218 |
Q |
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| T |
1533477 |
ctcggatacaacac---------cgatggggaagacccctacaaatatgtctccctcgtttccaaaaaattcttgtccattaccaaccgtctccgattct |
1533567 |
T |
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